NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88211.1 Public Mus musculus 11 Ggnbp2 23 108 98 CCDS HistoryNCBI Gene:217039Re-query CCDS DB by CCDS ID:88211.1Re-query CCDS DB by GeneID:217039See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018547.8 ENSMUSP00000018547.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018547.8Link to Ensembl Protein Viewer:ENSMUSP00000018547.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018547Re-query CCDS DB by Protein ID:ENSMUSP00000018547
Original member Current member NCBI NM_001364112.1 NP_001351041.1 Accepted alive Link to Nucleotide Sequence:NM_001364112.1Link to Protein Sequence:NP_001351041.1Re-query CCDS DB by Nucleotide ID:NM_001364112Re-query CCDS DB by Protein ID:NP_001351041Link to BLAST:NP_001351041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351041.1 738 Q5SV77-4 738 100% 0 0

Chromosomal Locations for CCDS 88211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84833010 84833213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84834335 84834583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84836365 84836513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84836599 84836724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84837841 84837988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84839981 84840175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84840261 84840435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84841421 84841624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84854054 84854167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84854255 84854380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84858440 84858538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84860545 84860798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84862238 84862318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84869877 84869969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGGCGCGACTGGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATCCCCC
TCTACATAGACGACACCCTGACGATGGTGATGGAATTTCCTGACAATGTTTTAAATCTTGATGGGCATCA
GAATAATGGTGCACAACTAAAGCAGTTTATTCAGCGACACAGTATGCTTAAGCAACAAGATTTAAGTATT
GCCATGGTGGTAACATCACGCGAAGTCTTGAGTGCACTTTCTCAGCTTGTCCCATGTGTTGGTTGTCGTC
GAAGTGTGGAACGCCTCTTTTCTCAACTTGTAGAGTCTGGAAATCCTGCCCTTGAACCCCTGACAGTAGG
GCCCAAGGGAGTACTATCTCTGACTCGGAGCTGCATGACTGATGCAAAAAAGCTTTATACATTATTTTAT
GTACATGGGTCCAAACTAAATGATATGATAGATGCTATTCCAAAAAGTAAGAAGAACAAGAGATGTCAGT
TACACTCTTTAGATACACACAAACCTAAACCTCTGGGTGAAGGGAGCAGTAGCAGTGTCAGTTCAGAGAA
GTTAAGTACAGATAAGAGAAGTAGTGAAGACCACAGGAAGGACAGCAAGTGTAGGATCATTTTCCATTAT
GGACCTTTCCAGGGAACAGCCAGAGGATGTTGGATGGATGTTTGGGAACTCATGTCCCAGGAATGCAGGG
ATGAAGTAGTTTTAATTGACTCTAGTTGTCTTTTAGAAACACTAGAAACATATCTTCGAAAGCACAGGTT
TTGCACTGATTGCAAAAATAAAGTCCTCCGAGCATACAATATCCTCATTGGTGAACTTGACTGCAGCAAA
GAGAAGGGCTACTGTGCTGCCCTGTATGAAGGATTGCGGTGCTGTCCACATGAGCGACACATACATGTTT
GCTGTGAAACAGACTTCATTGCACATCTCTTGGGTCGTGCTGAGCCAGAGTTCGCAGGAGGGCGAAGAGA
AAGACATGCTAAGACAATAGATATAGCTCAAGAAGAAGTTTTGACCTGCTTGGGGATTCATCTTTATGAA
CGACTGCATCGGATCTGGCAAAAACTACGGGCTGAAGAGCAGACGTGGCAGATGCTCTTTTATCTCGGTG
TTGACGCTTTACGTAAGAGCTTTGAGATGACTGTGGAAAAAGTGCAGGGTATTAGCCGCTTGGAACAACT
TTGTGAGGAATTTTCAGAGGAAGAACGAGTTAGAGAACTCAAGCAAGAAAAGAAACGCCAAAAACGGAAG
AACAGACGAAAAAATAAGTGTGTGTGTGACACTCCTGCTTCCTTACACACCGCAGACGAGAAAGCAGTGA
GCCGAGAGAAGGAAACAGACTTCATTGAAAACAGCTGCAACGCCTGTGGCAGTGCTGAAGATGGCGAGAC
TTGTGTAGAAGTAATGGTTACCAGTGAAAACACATCATGTACCTGTCCGAGCAGTGGCAATCTTTTGGGG
TCCCCTAAAATAAAGAAAGGTATGTCTCCACACTGTAATGGTAGTGACTGTGGATATTCATCTAGCATGG
AAGGAAGTGAAACAGGTTCTCGAGAAGGTTCAGATGTTGCCTGCACCGAGGGAATTTGTAACCATGATGA
ACATGGTGAAGATTCCTGTGTTCACCACTGTGAAGACAAAGAAGATGATGGTGACAGTTGTGTTGAATGT
TGGGCAAATTCTGAAGAAAATAACATAAAAGGAAAAAATAAAAAGAAGAAAAAGAAAAGCAAGATGTTGA
AATGCGATGAACATATCCAAAAACTTGGAAGCTGTATTACAGATCCAGGTAATCGAGAGACCTCAGGAAA
CACTATGCACACAGTGTTTCACCGTGACAAGACCAAAGATGCACATCCTGAGAGTTGTTGCAGCACTGAG
AAGGGTGGGCAGCCATTGCCTTGGTTTGAGCATAGGAAAAGCGTACCACAGTTCACAGAACCTACAGAAA
TGTCATTTGGTCCTGACTCTGGAAAAGGTGCCAAGAGCTTAGTTGAACTTCTTGATGAGTCTGAATGTAC
TTCAGATGAGGAAATCTTTATCTCACAAGATGAAATACAGTCATTTATGGCTAATAACCAGTCTTTCTAC
AGCAATAGAGAACAATACCGACAGCATCTGAAGGAGAAATTTAATAAATACTGCCGCTTAAATGATCACA
AGAGGCCCGTTTGTAGTGGCTGGCTGACAACGGCTGGAGCAAATTAA

Translation (738 aa):
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSMLKQQDLSI
AMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVLSLTRSCMTDAKKLYTLFY
VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGEGSSSSVSSEKLSTDKRSSEDHRKDSKCRIIFHY
GPFQGTARGCWMDVWELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSK
EKGYCAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCLGIHLYE
RLHRIWQKLRAEEQTWQMLFYLGVDALRKSFEMTVEKVQGISRLEQLCEEFSEEERVRELKQEKKRQKRK
NRRKNKCVCDTPASLHTADEKAVSREKETDFIENSCNACGSAEDGETCVEVMVTSENTSCTCPSSGNLLG
SPKIKKGMSPHCNGSDCGYSSSMEGSETGSREGSDVACTEGICNHDEHGEDSCVHHCEDKEDDGDSCVEC
WANSEENNIKGKNKKKKKKSKMLKCDEHIQKLGSCITDPGNRETSGNTMHTVFHRDKTKDAHPESCCSTE
KGGQPLPWFEHRKSVPQFTEPTEMSFGPDSGKGAKSLVELLDESECTSDEEIFISQDEIQSFMANNQSFY
SNREQYRQHLKEKFNKYCRLNDHKRPVCSGWLTTAGAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH