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Report for CCDS88189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88189.1 Public Mus musculus 11 Sgsm2 23 108 98 CCDS HistoryNCBI Gene:97761Re-query CCDS DB by CCDS ID:88189.1Re-query CCDS DB by GeneID:97761See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081799.5 ENSMUSP00000080489.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081799.5Link to Ensembl Protein Viewer:ENSMUSP00000080489.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081799Re-query CCDS DB by Protein ID:ENSMUSP00000080489
Current member NCBI NM_001374688.1 NP_001361617.1 Accepted alive Link to Nucleotide Sequence:NM_001374688.1Link to Protein Sequence:NP_001361617.1Re-query CCDS DB by Nucleotide ID:NM_001374688Re-query CCDS DB by Protein ID:NP_001361617Link to BLAST:NP_001361617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361617.1 1050 Q80U12-2 1050 100% 0 0

Chromosomal Locations for CCDS 88189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74850807 74850895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851099 74851266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851740 74851836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74853075 74853184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74853325 74853407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74853786 74853910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74854129 74854509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74857618 74857800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74858051 74858179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74858629 74858774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74858861 74858925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74859746 74859899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74863560 74863694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74865085 74865211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74865361 74865521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74866569 74866636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74867031 74867155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74867611 74867745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74867981 74868126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74868224 74868291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74868577 74868738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74869015 74869177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74891996 74892071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74896825 74896881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3153 nt):
ATGGGCAGCGCAGAGGACGCGGTCAAAGAAAAGCTGCTGTGGAACGTGAAGAAGGAGGTGAAACAAATCA
TGGAGGAGGCTGTCACCAGGAAATTCGTGCATGAAGATAGCAGCCACATCATTGCTCTGTGTGGTGCTGT
GGAGGCTTGCCTCCTGCATCAGCTAAGACGCCGTGCTGCTGGCTTTCTGCGAAGTGACAAGATGGCGGCC
CTGTTCACCAAAGTGGGGAAGACATGCCCCGTGGCTGAAGATATCTGCCACAAGGTGCAGGAGTTGCAGC
AACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGG
GAAGGCCCCAGCTCTCAGCCCACAGGCCTTGAAACACATATGGGTACGCACAGCACTCATGGAGAAAGTT
CTGGACAGGGTTGTACAGTACCTGGCCGAAAACTGCAGCAAGTATTACGAGAAGGAAGCATTATTGGCAG
ATCCTGTGTTTGGCCCAATCCTGGCATGTCTCCTAGTGGGACCCTGTGCCTTGGAATACACGAAGCTCAA
GACAGCTGATCACTACTGGACTGACCCCTCTGCTGATGAGCTGGTTCAGAGGCACCGTATCCGGGGTCCC
CCTAACCGTCAGGACTCCCCGGCAAAGCGCCCTGCCCTGGGGATCCGGAAGCGCCACTCTAGTGGGAGTG
CCTCAGAAGACCGGCTTGCCGCCTGCGCCCGTGAGTACGTGGAGTCTCTGCACCAGAACTCAAGAACACG
CCTGCTCTATGGCAAGAACAACGTGTTGGTGCAGCCGAAGGAGGACATGGAGGCAGTCCCTGGCTACCTC
TCCCTGCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCG
GGGACTCTGAGCTAGAGAAGAGTGTTTACTGGGACTATGCCTTGGTGGTGCCCTTCAGTCAGATCGTCTG
CATCCACTGCCACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGCCG
CCACTACACTTCCCACAGGGAGGACACCTGCTGTCCTTCCTGTCATGTCTGGAGAATGGGCTGCTGCCTC
GTGGACAGCTTGAGCCCCCGCTGTGGACCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACG
CAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGGCAACGGACTACGTGTTCCGGATC
ATCTACCCCGGACATAGGCACGAGCATATCACTATTAACTACCACCACCTAGCGGCCAGCCGAGCGGCCT
CGGTGGACGATGATGAGGAAGAGGAGGATAAACTACACGCGATGCTCTCAATGATCTGCTCGCGGAACCT
CACAGCTCCCAATCCGATGAAAGATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACA
GCCTGGCACCTAGAGCCCCTGTGTAGCCAGGGCTCCTCCTGCCTTTCCTGTTCCTCCAGTAGCTCCCCAT
ATGCAACCCCCAGTCACTGCAGCTGCATTCCTGACAGGTTGCCCCTCCGGCTGCTGTGTGAGAGCATGAA
GAGGCAGATTGTGTCCCGGGCCTTCTACGGCTGGCTAGCCTACTGTCGCCACCTGTCCACAGTGAGGACA
CACCTGTCTGCATTGGTGCATCACAACATCATTCCACCAGACAGGCCCCCGGGGGCCTCAGGTGGCCTCA
CCAAGGATGTGTGGAGCAAGTATCAGAAGGACGAAAAGAACTACAAGGAGCTGGAGCTGCTGCGGCAGGT
GTACTATGGAGGCGTGGAACACGAGATTCGCAAGGACGTCTGGCCCTTCCTACTTGGCCACTACAAGTTT
GGCATGAGCAAGAAGGAGATGGAGCAGGTGGATACAGCAGTGGCAGCAAGGTACCAGCAGGTGTTGGCAG
AGTGGAAGGCCTGCGAGGTGGTGGTGAGGCAGCGGGAGCGGGAGGCTCACCCAGCCACGCTCACCAAGTT
CTCCTCGGGCAGCAGCATCGATAGCCACGTGCAGCGCCTCGTGCACCGGGATTCCACCATCAGCAATGAT
GTATTTATCTCTGTGGATGATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGG
AACAGGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGACTCTCC
AGACTCAGGGCTGCCTTCCTCCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCA
CAGAGTGTGGGCTTTGAAGACGACGGTGCTGGAGAAGATGGCTCCGAGGGTCCAGCCACTGCAGCCCACA
CTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGA
GCTCGCAGCTGTGTGCGCCGCAGCCTATACTATAGAATTACTGGACACCGTGGCCTTAAATCTGCACCGC
ATAGACAAGGATGTGCAGAGATGTGACCGCAACTACTGGTACTTCACGACCTCCAACCTCGAGAGGCTCA
GAGACATCATGTGCAGCTACGTGTGGGAGCACCTGGATATGGGCTACGTGCAGGGCATGTGTGATCTCCT
GGCACCTCTCCTGGTCATCCTTGACAATGACCAGCTGGCCTACAGCTGCTTCAGCCACCTCATGAAGAGG
ATGGGCCAGAACTTCCCCAGTGGGGGTGCCATGGACAGCCACTTTGCCAACATGCGCTCCCTCATCCAGA
TCTTGGACTCAGAGCTATTTGAGCTGATGCATCAAAATGGAGACTATACCCACTTCTATTTCTGTTATCG
CTGGTTCCTGCTGGATTTTAAAAGAGAGCTGCTGTATGAGGACGTGTTTGCAGTGTGGGAAGTGATCTGG
GCAGCCAGGCGCATCTCCTCAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGGTGGAGGCCTACAGAG
AGATTATCCGTGACAACAACATGGACTTCACCGACATCATCAAATTCTTCAACGAGCGGGCTGAGCGGCA
TGATGCCCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAAGGTGCAGATGCTCATAGACAACAAG
TGA

Translation (1050 aa):
MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRSDKMAA
LFTKVGKTCPVAEDICHKVQELQQQAEGRKPSGGSQEALRKQGSTGGKAPALSPQALKHIWVRTALMEKV
LDRVVQYLAENCSKYYEKEALLADPVFGPILACLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGP
PNRQDSPAKRPALGIRKRHSSGSASEDRLAACAREYVESLHQNSRTRLLYGKNNVLVQPKEDMEAVPGYL
SLHQSAENLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQIVCIHCHQQKSGGTLVLVSQDGIQRP
PLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVFPKLRKRSSIRSIDVEELGVGRATDYVFRI
IYPGHRHEHITINYHHLAASRAASVDDDEEEEDKLHAMLSMICSRNLTAPNPMKDAGDMIEMQGFGPSLT
AWHLEPLCSQGSSCLSCSSSSSPYATPSHCSCIPDRLPLRLLCESMKRQIVSRAFYGWLAYCRHLSTVRT
HLSALVHHNIIPPDRPPGASGGLTKDVWSKYQKDEKNYKELELLRQVYYGGVEHEIRKDVWPFLLGHYKF
GMSKKEMEQVDTAVAARYQQVLAEWKACEVVVRQREREAHPATLTKFSSGSSIDSHVQRLVHRDSTISND
VFISVDDLEPSGPQDLEDSKPKREQEPGAGTPGIAAAEQQSVEFDSPDSGLPSSRNYSVASGIQSSLDEA
QSVGFEDDGAGEDGSEGPATAAHTFPGPHDPGQETLAPASELEAGQELAAVCAAAYTIELLDTVALNLHR
IDKDVQRCDRNYWYFTTSNLERLRDIMCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKR
MGQNFPSGGAMDSHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIW
AARRISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAERHDAQEILRIARDLVHKVQMLIDNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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