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Report for CCDS88124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88124.1 Public Mus musculus 11 Ewsr1 23 108 98 CCDS HistoryNCBI Gene:14030Re-query CCDS DB by CCDS ID:88124.1Re-query CCDS DB by GeneID:14030See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102930.9 ENSMUSP00000099994.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102930.9Link to Ensembl Protein Viewer:ENSMUSP00000099994.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102930Re-query CCDS DB by Protein ID:ENSMUSP00000099994
Original member Current member NCBI NM_001362614.1 NP_001349543.1 Accepted alive Link to Nucleotide Sequence:NM_001362614.1Link to Protein Sequence:NP_001349543.1Re-query CCDS DB by Nucleotide ID:NM_001362614Re-query CCDS DB by Protein ID:NP_001349543Link to BLAST:NP_001349543.1

Chromosomal Locations for CCDS 88124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5070064 5070103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5070228 5070480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5070626 5070723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5070996 5071158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5071520 5071642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5072812 5072941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5078473 5078591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5078920 5078952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5079485 5079519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5082253 5082433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5083360 5083571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5085896 5086063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5087960 5088146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5091460 5091477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5091859 5091982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5093681 5093732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5093869 5093905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5099009 5099021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGGCGTCCACGGATTACAGTACCTATAGTCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCGCCC
AGCCAACTCAAGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCC
TACTGATGTCAGCTATACTCAGGCTCAGACCACTGCCACCTACGGGCAGACTGCATATGCAACTTCTTAC
GGACAGCCTCCCACTGTAGAAGGGACCAGTACAGGTTATAGCACTCCAACTGCCCCGCAGGCGTACAGCC
AGCCTGTGCAGGGATATGGCACTGGGACTTATGACAGCACCACTGCTACAGTCACCACAACGCAGGCCTC
TTACGCAGCTCAGACTGCATATGGCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGCCAACAGCCACC
GCACCTACCAGACCACAGGATGGTAACAAGCCTGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTT
ATAACCAACCCAGCCTAGGATATGGACAGAGTAACTACAGCTATCCCCAGGTACCTGGGAGCTACCCAAT
GCAGCCAGTCACCGCACCTCCATCTTATCCTCCTACCAGCTACTCCTCTTCACAGCCGACTAGTTACGAT
CAGAGCAGTTACTCTCAGCAGAACACCTATGGGCAGCCGAGCAGCTATGGACAACAGAGTAGCTATGGTC
AACAAAGCAGCTATGGGCAGCAGCCTCCTACTAGTTACCCCCCTCAGACTGGATCCTACAGCCAGGCTCC
AAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGC
ATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCTTGAGTGGCCCTG
ATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACG
CGGTGGACTGGGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGAT
CTTGATCTAGGCCTTCCTATAGATCCCGATGAAGACTCTGACAACAGTGCAATTTATGTGCAAGGATTAA
ATGACAATGTGACTCTGGATGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTCAAGATGAACAAGAG
AACTGGACAACCCATGATCCATATCTACCTGGATAAGGAGACAGGAAAGCCTAAAGGGGACGCCACAGTG
TCCTATGAAGATCCACCAACTGCAAAGGCTGCCGTGGAATGGTTTGATGGGAAAGATTTTCAAGGAAGCA
AACTTAAAGTGTCTCTTGCCCGAAAGAAGCCTCCAATGAACAGCATGCGGGGAGGCATGCCACCTCGTGA
GGGCAGGGGGATGCCACCACCACTTCGTGGAGGTCCTGGTGGCCCAGGAGGCCCTGGAGGACCCATGGGT
CGCATGGGAGGCCGTGGAGGAGACAGAGGGGGCTTCCCTCCAAGAGGGCCCCGAGGCTCCAGAGGAAACC
CCTCTGGAGGAGGAAATGTCCAGCACCGAGCTGGAGACTGGCAGTGTCCCAATCCGGGCTGTGGAAACCA
GAACTTCGCTTGGAGAACAGAATGCAACCAGTGTAAGGCCCCTAAGCCCGAGGGCTTCCTCCCGCCACCC
TTTCCACCTCCGGGTGGTGATCGTGGACGAGGTGGCCCTGGTGGCATGCGAGGAGGAAGAGGAGGACTCA
TGGACCGTGGTGGTCCTGGAGGAATGTTCAGAGGTGGCAGAGGTGGAGACAGAGGAGGCTTCCGAGGTGG
CCGTGGAATGGACCGAGGTGGCTTTGGTGGAGGAAGACGAGGTGGTCCTGGGGGGCCTCCTGGACCTTTA
ATGGAACAGATGGGAGGAAGAAGAGGCGGACGTGGAGGACCTGGGAAAATGGATAAAGGCGAGCACCGTC
AGGAACGCAGAGACCGGCCCTACTAG

Translation (661 aa):
MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSY
GQPPTVEGTSTGYSTPTAPQAYSQPVQGYGTGTYDSTTATVTTTQASYAAQTAYGTQPAYPTYGQQPTAT
APTRPQDGNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSSQPTSYD
QSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSS
MGVYGQESGGFSGPGENRSLSGPDNRGRGRGGFDRGGMSRGGRGGGRGGLGAGERGGFNKPGGPMDEGPD
LDLGLPIDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV
SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMG
RMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPP
FPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPL
MEQMGGRRGGRGGPGKMDKGEHRQERRDRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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