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Report for CCDS88111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88111.1 Public Mus musculus 10 Myl6 23 108 98 CCDS HistoryNCBI Gene:17904Re-query CCDS DB by CCDS ID:88111.1Re-query CCDS DB by GeneID:17904See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217776.1 ENSMUSP00000151786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217776.1Link to Ensembl Protein Viewer:ENSMUSP00000151786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217776Re-query CCDS DB by Protein ID:ENSMUSP00000151786
Original member Current member EBI ENSMUST00000219236.1 ENSMUSP00000151915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219236.1Link to Ensembl Protein Viewer:ENSMUSP00000151915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219236Re-query CCDS DB by Protein ID:ENSMUSP00000151915
Original member NCBI NM_001317217.1 NP_001304146.1 Updated not alive Link to Nucleotide Sequence:NM_001317217.1Link to Protein Sequence:NP_001304146.1Re-query CCDS DB by Nucleotide ID:NM_001317217Re-query CCDS DB by Protein ID:NP_001304146
Current member NCBI NM_001317217.2 NP_001304146.1 Accepted alive Link to Nucleotide Sequence:NM_001317217.2Link to Protein Sequence:NP_001304146.1Re-query CCDS DB by Nucleotide ID:NM_001317217Re-query CCDS DB by Protein ID:NP_001304146Link to BLAST:NP_001304146.1

Chromosomal Locations for CCDS 88111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128491298 128491347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128492059 128492136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128492229 128492402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128492602 128492745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128493539 128493566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128493809 128493811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTGTGACTTCACCGAGGACCAGACCGCAGAATTCAAGGAGGCTTTCCAGCTGTTTGACCGAACAGGTG
ATGGCAAGATCCTGTACAGCCAGTGTGGGGATGTGATGCGGGCCCTGGGCCAGAACCCTACCAACGCCGA
GGTGCTCAAGGTCCTAGGGAACCCCAAGAGTGATGAGATGAATGTGAAGGTGCTGGACTTTGAGCACTTC
CTGCCCATGCTGCAGACCGTGGCCAAGAACAAGGACCAGGGAACCTACGAGGATTATGTTGAAGGCCTTC
GTGTGTTTGACAAGGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGTCATGTCCTAGTCACACTGGG
CGAGAAGATGACAGAGGAAGAAGTAGAGATGCTAGTGGCGGGGCATGAGGACAGCAATGGTTGCATCAAC
TATGAAGCGTGGAGGTACCCTAACCCAAAGCTGACCTCTCCTCCTGCCAGTGGCTGA

Translation (158 aa):
MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHF
LPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCIN
YEAWRYPNPKLTSPPASG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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