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Report for CCDS87999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87999.1 Public Mus musculus 10 Scml4 23 108 98 CCDS HistoryNCBI Gene:268297Re-query CCDS DB by CCDS ID:87999.1Re-query CCDS DB by GeneID:268297See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105494.7 ENSMUSP00000101133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105494.7Link to Ensembl Protein Viewer:ENSMUSP00000101133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105494Re-query CCDS DB by Protein ID:ENSMUSP00000101133
Original member Current member NCBI NM_001359265.1 NP_001346194.1 Accepted alive Link to Nucleotide Sequence:NM_001359265.1Link to Protein Sequence:NP_001346194.1Re-query CCDS DB by Nucleotide ID:NM_001359265Re-query CCDS DB by Protein ID:NP_001346194Link to BLAST:NP_001346194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346194.1 350 Q80VG1-2 350 100% 0 0

Chromosomal Locations for CCDS 87999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42924072 42924183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42930404 42930604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42934953 42935147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42946869 42947141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42955889 42956034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42957619 42957744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGACTCCCTTGGCCCTGTCACCTCCACGGAGTACCCCGGAACCCGATCTCAGCTCCATCCCTCAGGATG
CAGCCACCATTCCCAGCCTGGTGGTCCCAGAGGCTCTCACAGTATGCCTCTACATAAACAAACAGGCCGA
TGTGGGGCCGTACCTGGAGAGGAGGAAGCTACAGCAGCTTCCGGAGCGCCTGGGACCTGAGCGGCCCGCC
ACCGTCCTGCAGCAGGCGGTGCAAGCATGCATCGATTGTGCGCACCAGCCTCGGCTGGTCTTCTCCCTCG
TCAAGCAGGGATACCGAGGCGAGCTGGTGTCAGTCTCTGCTTCCTTCGATGGAAAGCAGCACTTGAGGAG
TCTGCCTGTGGTGAACAGTGTGGGCTATGTCCTCCGTTTCCTGACCAAACTGTGCCGCAGCCTCCTGTGT
GACAACCTCTTCAGCCACCTGCCTTTTCCCGGGAGCATCGGCGCCTCTGACAAGGCGCAGGAGAGAGAGG
ATGGGAGGACTGAGTCAGCCAAGGTAGCCACGGCTGAAGAGTGTCTGGCAAACGCAGTGGGCATGAACCG
CTACGCCATGGACTTTAGCCACAGGGGCTCCGTAACCCACTCTTCCTCACTGTACAAGAGGCTGACCTGC
GGAGACAGCCACCTTGCCGGAGGCCCCGCCACCACCACCAGTGGTTCCCGCACCAACCCTGTTCCCTCTG
GAGGTTCGTCGTCACCTGGACTGAGGCTGCCAGCCTCCAGCCCCAAGAGGAATGGAACAGCCATCGAAGG
AAACAGATGTGCCCCGAGCCCCTCTCCGGAGGTGCAGGATACCAGGCGACCAAGCAGCAGAAACCCTTCT
ACCTGGACCGTGGAGGACGTGGTCCGGTTTGTGAAAGATGCTGATCCCGAGGCTCTGGGACCTCATGTGG
AGCTCTTCAGAAAGCACGAGATTGATGGCAATGCCTTGTTGTTGCTGAGGAGCGACATGATCATGAAGTA
CCTGGGACTGAAGCTGGGACCCGCACTGAAACTCTGCTATCACATTGACAAGCTAAAGCAAGCTAAATTC
TAA

Translation (350 aa):
MTPLALSPPRSTPEPDLSSIPQDAATIPSLVVPEALTVCLYINKQADVGPYLERRKLQQLPERLGPERPA
TVLQQAVQACIDCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLC
DNLFSHLPFPGSIGASDKAQEREDGRTESAKVATAEECLANAVGMNRYAMDFSHRGSVTHSSSLYKRLTC
GDSHLAGGPATTTSGSRTNPVPSGGSSSPGLRLPASSPKRNGTAIEGNRCAPSPSPEVQDTRRPSSRNPS
TWTVEDVVRFVKDADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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