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Report for CCDS87812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87812.1 Public Mus musculus 1 Cspp1 23 108 98 CCDS HistoryNCBI Gene:211660Re-query CCDS DB by CCDS ID:87812.1Re-query CCDS DB by GeneID:211660See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186294.6 ENSMUSP00000139775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186294.6Link to Ensembl Protein Viewer:ENSMUSP00000139775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186294Re-query CCDS DB by Protein ID:ENSMUSP00000139775
Original member Current member NCBI NM_001368816.1 NP_001355745.1 Accepted alive Link to Nucleotide Sequence:NM_001368816.1Link to Protein Sequence:NP_001355745.1Re-query CCDS DB by Nucleotide ID:NM_001368816Re-query CCDS DB by Protein ID:NP_001355745Link to BLAST:NP_001355745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355745.1 1142 B2RX88-2 1142 100% 0 0

Chromosomal Locations for CCDS 87812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 10046493 10046555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10047424 10047526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10058720 10058823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10059824 10059847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10064333 10064413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10065323 10065421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10066426 10066820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10074860 10074946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10077172 10077242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10082253 10082346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10083501 10083558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10085747 10085952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10088051 10088184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10088882 10088960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10090188 10090317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10095866 10096013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10108369 10108481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10112393 10112542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10112876 10113022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10113603 10113707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10116018 10116084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10116614 10116731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10126340 10126479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10127423 10127563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10129986 10130032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10132454 10132517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10133164 10133273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10134092 10134230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10135934 10136145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGGATTTAAATTGCTATCCTCATCTAGTGGCAGGGCATGCTCACAGTTACTTGATATGGAGGGGAAAGG
CGTCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAGAACATTCCACCAAGCAG
CCAACAACAGCCCAAGGGACCCTTAGGAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAA
CAGAAGAAACATAAATTAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAGGGCATTACAC
AAGCAAAGAGAAAGAAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCC
CATTGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTC
AGGGGTAAGGCAGAATCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAGCCTAAGAGTCAAAGAA
ATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAAATACAGACTGCATACACACATTCAGA
GGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTACCGACAGCTAGATGGTGAAATTGAATTAAGGAGC
AGAAGACCGCTTAAACAAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCA
GCGCTGGTGTCCCAGAGAGAAGAGCCCGCAGGGCTAACGGGGAGCGGGTGCTTGACAGACAACATTGCAG
AGCCGACCGAGACCCTGGTGTGAGTGAAGACATGGACGAGAGGTTTAGATTTGAAAGTGATTTTGATAGA
AGACTTTTGAGAGTGTATACAAATGGCAGGCCGCATGGGAGCAGACGAGGGTATGTGGATGGGGATGATG
TCCCAGAAGAGCCAAACACACAGATCTCAGCTGCTGAAAATAAAAGTGTTCACTGTAATGGACCACCCAG
ATCTGCTGATCTCGATATCACAAGTCCATTTGCAGGCATGCTCTTTGGAGGTGAAGATCGAGAACTTACC
AAGAGAAGGAAGGAGAAATATAGGCAAGAACTACTAGAACAGATAGCTGAGCAACAGAAGAAGAAGAGAC
GAGAAAAAGATTTAGCATTTGGAATTACAACTTCTGGAGTACAAGACCCTGAAAAATCGCCTGATAGACT
AAAGCAGTTTAGTTTGACACCAAGACACTTTGAAGAGATGCCACCTGAGAGGCCCAGAGTAGCTTTCCAG
ACACCTCCCCCTCCCTTCTCTGCCCCGTCTAGCCCATCCGTCCCACCAGTTCATTCCGCCCCTTCTCACA
ATGAAGACTTGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGCCTGTGCC
TCTGAATCCACCCCCGCCTCCGCTCCTTGCCCCTCCAGCTTCTAACTATCGAACTCCTTACGATGATGCG
TACTATTTTTACGGTGCCAGAAATACACTGGATCCCAATATTGTATACTATGGTTCAGGAATGATTGGAG
GACAGCCTGCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACTGTTGG
ACAGAATGAACAGAAAGTTCTTAGTGATGGACTCAGGAATTCAGGACTGGTCTTTGAGGATAAGCCAAAA
CCTTCTACACAGTCGCTTCAGTCTTACCAAGAAGCTTTGCAGGAGCAGATTCGGGAAAGAGAAGCAAGAA
GGAAGAAAGAACGTTTAGAAAAAGAAGAATATGAAGCTAAATTAGAAGCCGAAATGAGGATCTACAACCC
CTGGGGGAAGGGCGGAGGTGGTGCTCCTCTCAGAGACGCCAAAGGAAATCTGATAAGTCCTTTGCAAACA
CAAAGCTCTCCTTTTGCCCGGGGAAACACATTTGGTGAGCCACTCAGCGAGCTTCAGATTAAACAGCAAG
AATTATACAAGAATTTTCTTCGTTTTCAGATTGAGGAAAAGAGACAAAGAGAAGAAGCCGAGCGCGAGAA
GCTGAGAGTTGCTGAAGAGAAGGAAGAAAAGCGGCTTGCGGAGCAGAGGGCAAGGATTCAGCAAGAGTAT
GAGGAGGAGCAGGAGCGGAGGAGGGAGAAGGAGGAGGAGCAAAGGTTGAAAAATGAAGAACTTATTCGGT
TAGCTGAAGAGAGGCGAAAGGAAGCGGAAAGAAAGAAGAAAGAGGAGGAAGAAAAACATAACTTGCAACT
TCAGCATTACTATGAGAGAGAAAATATTATCGGAGATGAAACAAAGCACTTGAGACAGCCTTCTCCTGTA
GTTCCTGCTCTTCAGAACAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGTCGACACCATCATAAGTT
CCTTCATTCACGAAAGCTCCATGTCCCGGGCACAGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTCCG
TGCAGAAGAGGAGAAAAAAAATGTGATTATGGAGTTATCAGAAATGAGGAAGCAGCTCCGGAGCGAGGAG
AGGCGTTTGCAGGGGCGGCTGCTGCACCTGGACAGTGACGACGAGATCCCCATGAGGAAAAGAGAGAGGA
ACCCAATGGATATATTTGACATGGCTAGACATCGGGTACAAGCCCCTGTCAGAAGACCATCGCCTAAGGG
CTTAGATGCTACTACTTTTCAGAATATTCATGACTTTAATGAGCTGAGAGAGAGAGATTCAGATACTCGA
GTGGATCTGAGATTAATGTACCCAGATCCTCCCCGCGATCATCACACCTTGGAGATTCAGCAGCAGGCCC
TACTCCGAGAGCAGCAGAAGAGGCTTAATAGAATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGACAC
CATCTGCACTGATAATGCACAAGGGCGCAGAATGCCCAGAGATGACACTAATGATTTTTTGAAAAATTCA
TTACTAGAATCTGATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAATGCCT
TCCCTCCACCATCACAGCTGCCCTCTGCAAGGGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGA
CAGTAGTCGGCTGCACACCCCACAAGATGGTCTCTCTTTAAAATCTATCTCCAGTGTAAATGTCGATCAA
GTTAGAATGAGAAATGAAGACAGAATGAGAAGACTGACTGAGCAGCAGAAGAAACCCACTAACACAGATG
ATGAGGGTTCACTGGTTGATCCTGATGACATCATGAGACACCTGAGTGATGATGGACGCAACTCTGCGGC
AACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAA
GAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTTTACTTGGCAGGGCCTCTCTGCTGCACATGCTTAA

Translation (1142 aa):
MDLNCYPHLVAGHAHSYLIWRGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYE
QKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFL
RGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRS
RRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDR
RLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELT
KRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQ
TPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDA
YYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPK
PSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLISPLQT
QSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEY
EEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPV
VPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEE
RRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTR
VDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNS
LLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQ
VRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNE
EQHKGPGKPGTFTWQGLSAAHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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