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Report for CCDS87744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87744.1 Public Homo sapiens X CENPVL2 24 110 108 CCDS HistoryNCBI Gene:441495Re-query CCDS DB by CCDS ID:87744.1Re-query CCDS DB by GeneID:441495See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000634648.1 ENSP00000489328.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000634648.1Link to Ensembl Protein Viewer:ENSP00000489328.1Re-query CCDS DB by Nucleotide ID:ENST00000634648Re-query CCDS DB by Protein ID:ENSP00000489328
Original member Current member NCBI NM_001355278.1 NP_001342207.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001355278.1Link to Protein Sequence:NP_001342207.1Re-query CCDS DB by Nucleotide ID:NM_001355278Re-query CCDS DB by Protein ID:NP_001342207Link to BLAST:NP_001342207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342207.1 272 P0DPI3 272 100% 0 0

Chromosomal Locations for CCDS 87744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51682013 51682831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGGCAGAGTGAGGAACCGCGCCACTGCTCAGCGGCGGAGGCGAAAGCGGCCCGGGGATCCTCCCGCCG
CCTGCGCGGCCATCGCGGTCACGGGCGCCAGCCGCGCGCAGTGCCCCCGGGTCCAAGTCGGGGTCGGGAG
CCACGCGGCGGCCAAGAGGTGGCTGGGTAGGTGGCGACGGAAGCGCCGCTGGCGGCGGGTCCGGAAGGCG
GGCCCCAGAGACCTGCTGCCCTCCGCGCCAACCCCGGACCCGCCGGGGCCCGCCCCGTCCCCCAAGGATC
TGGACCTGGGCGCACAGCGGGAGCGCTGGGAGACGTTCAGGAAGCTGCGGGGCCTCAGCTGCGAGGGCGC
CGCCAAGGTCCTGCTGGACACCTTCGAGTACCCGGGCCTCGTGCATCACACCGGGGGCTGCCACTGCGGC
GCGGTCCGCTTTGCGGTCTGGGCCCCTGCAGATCTGCGCGTCGTGGATTGCAGCTGCAGGCTGTGCAGGA
AGAAGCAGCACCGCCACTTCCTCGTCCCGGCCTCGCGCTTCACGCTGCTCCAGGGCGCAGAAAGCATCGT
CACCTATCGGTCCAACACGCACCCGGCGCTGCACAGCTTCTGCAGCAGGTGCGGGGTGCAGAGTTTCCAC
GCAGCTGTCTCTGACCCCCGCGTGTACGGCGTCGCCCCGCACTGCCTGGACGAGGGCACCGTGCGCAGCG
TGGTCATCGAGGAGGTCGGCGGTGGCGACCCGGGGGAGGAGGCCGCCGAGGAGCACAAGGCCATCCACAA
GACGTCCTCCCAGTCAGCCCCTGCCTGTCCCCGCGAACAGGAGCAGTGA

Translation (272 aa):
MGRVRNRATAQRRRRKRPGDPPAACAAIAVTGASRAQCPRVQVGVGSHAAAKRWLGRWRRKRRWRRVRKA
GPRDLLPSAPTPDPPGPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCG
AVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIVTYRSNTHPALHSFCSRCGVQSFH
AAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEAAEEHKAIHKTSSQSAPACPREQEQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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