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Report for CCDS87193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87193.1 Public Homo sapiens 3 LRCH3 24 110 108 CCDS HistoryNCBI Gene:84859Re-query CCDS DB by CCDS ID:87193.1Re-query CCDS DB by GeneID:84859See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428136.2 ENSP00000394763.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428136.2Link to Ensembl Protein Viewer:ENSP00000394763.2Re-query CCDS DB by Nucleotide ID:ENST00000428136Re-query CCDS DB by Protein ID:ENSP00000394763
Original member Current member EBI ENST00000438796.6 ENSP00000399751.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438796.6Link to Ensembl Protein Viewer:ENSP00000399751.2Re-query CCDS DB by Nucleotide ID:ENST00000438796Re-query CCDS DB by Protein ID:ENSP00000399751
Original member Current member NCBI NM_001363887.1 NP_001350816.1 Accepted alive Link to Nucleotide Sequence:NM_001363887.1Link to Protein Sequence:NP_001350816.1Re-query CCDS DB by Nucleotide ID:NM_001363887Re-query CCDS DB by Protein ID:NP_001350816Link to BLAST:NP_001350816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350816.1 803 Q96II8-2 803 100% 0 0

Chromosomal Locations for CCDS 87193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 197791279 197791540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197814908 197815052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197817176 197817302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197820325 197820430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197826878 197827014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197829564 197829673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197830770 197830863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197832197 197832317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197835674 197835822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197839321 197839397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197847409 197847460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197847872 197848021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197852561 197852620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197854392 197854445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197858834 197858905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197865423 197865471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197866112 197866219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197870160 197870278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197871325 197871462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197875698 197875775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197880512 197880715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGCGGCCGCGGGCTTGGTCGCTGTGGCAGCGGCTGCCGAGTACTCTGGCACGGTAGCGTCGGGAGGTA
ACCTCCCTGGTGTTCACTGCGGCCCAAGCTCCGGGGCAGGCCCTGGTTTTGGCCCGGGCTCGTGGAGCCG
CTCTCTCGATCGAGCCCTGGAGGAGGCGGCGGTCACTGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGG
GAGTTTCCCCGGGGAGCGGCCAACCACGACCTGACGGACACCACCCGGGCGGACCTGTCGCGAAATCGCC
TTTCAGAAATTCCTATAGAAGCATGTCACTTTGTTTCTCTGGAAAATCTCAACTTGTACCAAAATTGTAT
TCGTTATATTCCAGAGGCAATTTTAAACCTACAAGCTCTAACATTCTTAAATATTAGTCGGAACCAACTG
TCAACATTGCCGGTACACTTGTGTAATTTGCCATTGAAAGTCTTAATTGCTAGTAATAACAAATTGGTGT
CACTTCCAGAAGAAATTGGACACCTTAGACATTTGATGGAACTTGATGTGAGCTGCAATGAAATTCAAAC
TATACCTTCCCAAATTGGTAACCTGGAGGCCTTGAGAGACCTTAATGTAAGAAGAAATCACCTAGTACAT
TTGCCTGAAGAGCTGGCGGAGTTGCCTTTGATACGGTTAGACTTCTCATGCAATAAAATTACCACAATCC
CTGTTTGTTATCGGAACCTCAGGCACCTACAGACGATCACCCTAGATAACAATCCACTACAATCACCTCC
TGCACAGATATGTATAAAAGGCAAAGTCCACATATTTAAATACCTGAACATACAAGCTTGTAAGATTGCT
CCAGATCTGCCGGATTATGATAGGAGACCGTTGGGTTTTGGCTCCTGCCATGAAGAACTGTACTCAAGTC
GCCCTTATGGAGCCCTTGATTCAGGCTTCAATAGTGTGGACAGTGGTGATAAGAGATGGTCAGGGAATGA
ACCTACAGATGAATTTTCAGATCTGCCTCTTCGAGTAGCAGAGATTACTAAAGAACAAAGACTACGAAGA
GAAAGCCAGTACCAAGAGAACCGCGGCAGTTTGGTAGTAACAAACGGCGGAGTGGAACATGATCTGGATC
AGATTGACTACATAGACAGCTGCACCGCAGAGGAAGAGGAGGCCGAGGTGAGACAGCCCAAGGGACCAGA
CCCAGACAGCCTTAGTTCACAGTTTATGGCGTATATTGAACAGCGGCGAATCTCTCATGAGGGTTCACCA
GTAAAGCCAGTAGCCATTAGGGAGTTTCAAAAAACAGAAGATATGAGAAGATATTTACATCAAAACAGGG
TTCCAGCTGAGCCATCTTCCCTCCTGTCACTATCAGCAAGTCACAATCAGCTGTCACACACAGACCTGGA
ACTTCATCAGAGAAGGGAGCAGTTAGTAGAGCGCACTCGGAGAGAGGCTCAGCTTGCTGCCCTGCAGTAT
GAGGAGGAGAAAATAAGGACCAAGCAGATCCAGAGAGATGCTGTCCTGGACTTTGTCAAACAAAAAGCAT
CACAAAGTCCACAAAAACAGCACCCGCTCCTAGATGGCGTAGATGGTGAGTGCCCCTTCCCATCCAGAAG
GTCTCAGCACACTGATGATAGTGCCTTGTGCATGTCGCTGTCAGGGTTGAATCAAGTGGGCTGTGCTGCT
ACCCTGCCTCATTCTTCTGCCTTCACGCCTCTTAAGAGTGATGACAGACCTAATGCTCTATTAAGTTCAC
CTGCAACAGAAACAGTTCATCATTCCCCTGCATATTCTTTTCCTGCTGCTATCCAGAGAAATCAGCCTCA
GCGCCCTGAAAGCTTCCTTTTCCGAGCAGGTGTCAGGGCAGAAACCAACAAAGGTCATGCTTCACCCCTT
CCTCCATCTGCTGCACCTACCACTGATTCTACAGATTCCATAACAGGACAGAATTCAAGACAGAGAGAAG
AAGAGCTGGAATTAATAGACCAACTGCGTAAACATATTGAGTACCGGTTGAAAGTGTCTCTACCTTGTGA
TCTCGGAGCAGCTCTAACTGACGGTGTTGTTCTTTGCCATTTGGCCAATCATGTGCGACCTCGATCTGTC
CCAAGCATTCATGTTCCCTCACCAGCTGTACCTAAATTAACAATGGCGAAATGCAGGCGAAATGTGGAAA
ATTTCCTAGAAGCTTGCAGAAAAATTGGTGTACCTCAGGACAATCTTTGTTCCCCTTCCGACATCCTTCA
GCTAAACCTCAGCGTTAAAAGAACTGTTGAAACGCTCCTTTCTCTTGGGGCACACTCAGAAGAATCCAGT
TTTGTCTGTCTCTCTCTGCAGCTTCTGGGTTTTGTGGCATTTTACTGTACTGTGATGTTAACTCTCTGTG
TGCTTTATTACTGGCTCTTCCCCGCTCGCTGA

Translation (803 aa):
MAAAGLVAVAAAAEYSGTVASGGNLPGVHCGPSSGAGPGFGPGSWSRSLDRALEEAAVTGVLSLSGRKLR
EFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQL
STLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVH
LPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIA
PDLPDYDRRPLGFGSCHEELYSSRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRR
ESQYQENRGSLVVTNGGVEHDLDQIDYIDSCTAEEEEAEVRQPKGPDPDSLSSQFMAYIEQRRISHEGSP
VKPVAIREFQKTEDMRRYLHQNRVPAEPSSLLSLSASHNQLSHTDLELHQRREQLVERTRREAQLAALQY
EEEKIRTKQIQRDAVLDFVKQKASQSPQKQHPLLDGVDGECPFPSRRSQHTDDSALCMSLSGLNQVGCAA
TLPHSSAFTPLKSDDRPNALLSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRAGVRAETNKGHASPL
PPSAAPTTDSTDSITGQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSV
PSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHSEESS
FVCLSLQLLGFVAFYCTVMLTLCVLYYWLFPAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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