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Report for CCDS86396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86396.1 Public Homo sapiens 14 RTN1 24 110 108 CCDS HistoryNCBI Gene:6252Re-query CCDS DB by CCDS ID:86396.1Re-query CCDS DB by GeneID:6252See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395090.5 ENSP00000378525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395090.5Link to Ensembl Protein Viewer:ENSP00000378525.1Re-query CCDS DB by Nucleotide ID:ENST00000395090Re-query CCDS DB by Protein ID:ENSP00000378525
Original member Current member NCBI NM_001363702.1 NP_001350631.1 Accepted alive Link to Nucleotide Sequence:NM_001363702.1Link to Protein Sequence:NP_001350631.1Re-query CCDS DB by Nucleotide ID:NM_001363702Re-query CCDS DB by Protein ID:NP_001350631Link to BLAST:NP_001350631.1

Chromosomal Locations for CCDS 86396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59596745 59596787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603065 59603123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603212 59603258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603852 59603921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59605368 59605506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59607285 59607492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59610122 59610137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGCCATTTCTACCAGCTATTGACCTGTTGTATTGGCGGGACATCAAGCAGACGGGCATCGTGTTTGGGA
GTTTCCTGCTGCTGCTCTTCTCCCTGACCCAGTTCAGCGTGGTGAGCGTCGTGGCCTACCTGGCCCTGGC
CGCACTCTCAGCCACCATCAGTTTCCGCATCTACAAGTCTGTTTTACAAGCAGTGCAGAAAACCGACGAA
GGCCACCCTTTCAAGGCCTACTTGGAGCTTGAGATCACCCTTTCTCAGGAGCAGATTCAGAAGTACACGG
ACTGCCTGCAGTTCTACGTGAACAGCACACTTAAGGAACTGAGGAGGCTCTTCCTTGTCCAGGACCTGGT
GGATTCCTTAAAATTTGCAGTCCTGATGTGGCTCCTGACCTACGTTGGCGCTCTCTTCAATGGCCTGACC
CTGCTGCTCATGGCTGTGGTTTCAATGTTTACTCTACCTGTAGTGTATGTTAAGCACCAGGCACAGATTG
ACCAATATCTGGGACTTGTGAGGACTCACATAAATGCTGTTGTGGCAAAGATTCAGGCTAAAATCCCAGG
CGCTAAGAGGCATGCTGAGTAA

Translation (193 aa):
MPFLPAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDE
GHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT
LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPGAKRHAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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