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Report for CCDS86313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86313.1 Public Homo sapiens 12 TSPAN31 24 110 108 CCDS HistoryNCBI Gene:6302Re-query CCDS DB by CCDS ID:86313.1Re-query CCDS DB by GeneID:6302See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86313.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547472.5 ENSP00000449199.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547472.5Link to Ensembl Protein Viewer:ENSP00000449199.1Re-query CCDS DB by Nucleotide ID:ENST00000547472Re-query CCDS DB by Protein ID:ENSP00000449199
Original member Current member NCBI NM_001330168.2 NP_001317097.1 Accepted alive Link to Nucleotide Sequence:NM_001330168.2Link to Protein Sequence:NP_001317097.1Re-query CCDS DB by Nucleotide ID:NM_001330168Re-query CCDS DB by Protein ID:NP_001317097Link to BLAST:NP_001317097.1

Chromosomal Locations for CCDS 86313.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57745155 57745217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57746589 57746720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57747018 57747131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57747216 57747290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGTTTGTGGCGGCTTTGCCTGCTCCAAGAATGCGCTTTGCGCTCTCAACGTGGTCTACATGACAGATG
TCATCAATGCTTCTTGGTGGGTCATGAGCAACAAGACTCGGGATGAACTGGAAAGAAGTTTTGATTGTTG
TGGCTTATTCAACCTCACAACCCTGTATCAACAAGATTATGATTTCTGCACTGCAATCTGCAAGAGCCAG
AGCCCCACATGCCAGATGTGTGGAGAAAAGTTTCTTAAGCATTCAGACGAAGCCCTGAAAATCCTAGGGG
GTGTTGGACTCTTCTTTAGCTTTACAGAGATCCTTGGTGTTTGGCTAGCAATGAGATTTCGGAATCAGAA
GGATCCTAGAGCCAACCCCAGTGCCTTTCTATGA

Translation (127 aa):
MVCGGFACSKNALCALNVVYMTDVINASWWVMSNKTRDELERSFDCCGLFNLTTLYQQDYDFCTAICKSQ
SPTCQMCGEKFLKHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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