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Report for CCDS85977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85977.1 Public Homo sapiens 1 CDCP2 24 110 108 CCDS HistoryNCBI Gene:200008Re-query CCDS DB by CCDS ID:85977.1Re-query CCDS DB by GeneID:200008See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85977.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530059.3 ENSP00000489959.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530059.3Link to Ensembl Protein Viewer:ENSP00000489959.1Re-query CCDS DB by Nucleotide ID:ENST00000530059Re-query CCDS DB by Protein ID:ENSP00000489959
Original member Current member NCBI NM_001353655.3 NP_001340584.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353655.3Link to Protein Sequence:NP_001340584.1Re-query CCDS DB by Nucleotide ID:NM_001353655Re-query CCDS DB by Protein ID:NP_001340584Link to BLAST:NP_001340584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340584.1 540 Q5VXM1-3 540 100% 0 0

Chromosomal Locations for CCDS 85977.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54132968 54133294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54136630 54136808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54139753 54140106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54141098 54141433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54144466 54144813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54152844 54152922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGCTGGCAGAGTGGGGGGCTTGCCTGCTGCTGGCAGTGGCACTGCTGGGCCCAGGGCTCCAGGCCCAAG
CCATGGAAGGTGTCAAATGTGGGGGTGTGCTCTCAGCACCTTCTGGAAACTTCTCCAGCCCCAACTTCCC
TAGACTGTACCCCTACAACACAGAGTGCAGCTGGCTGATCGTGGTGGCCGAGGGATCCTCGGTGCTGCTC
ACCTTCCATGCCTTTGACCTAGAGTACCACGACACCTGCAGCTTCGACTTTCTGGAGATCTACAATGGGG
CCTCACCAGACAAGGGCAACCTGCTGGGGAGGTTCTGCGGCAAGGTGCCCCCGCCGCCCTTCACCTCCTC
CTGGCATGTCATGTCTGTCATCTTCCACTCGGACAAGCATGTGGCCAGCCATGGCTTTTCTGCGGGCTAC
CAGAAAGATGTGTGTGGCGGCGTCCTGACTGGCCTGTCAGGGGTCCTCACCAGTCCTGAGTATCCCAACA
ACTACCCGAACAGCATGGAGTGCCACTGGGTGATCCGGGCCGCTGGCCCTGCCCACGTCAAGCTGGTGTT
CGTGGACTTCCAGGTGGAGGGCAATGAAGAGTGCACCTATGACTACGTGGCTGTGCTTGGGGGGCCTGGC
CCCACCCGTGGGCACCACTACTGTGGCAGCACCAGGCCCCCCACCCTCGTGTCTCTGGGCCACGAACTGC
AGGTGGTCTTCAAGTCCGACTTCAACATCGGAGGCCGTGGCTTCAAGGCCTACTACTTCTCAGGAGAATG
CCAGGAGGTATACATGGCCATGCGGGGCAACTTCTCCAGCCCACAGTACCCCAGCTCCTACCCCAACAAC
ATCCGCTGCCACTGGACCATCCGCCTGCCCCCGGGCTACCAGGTCAAGGTGTTCTTCCTGGACCTGGACC
TGGAGGAGCCCAACAGCCTGACCAAGACCTGTGACTTTGACCATCTGGCGGCCTTCGATGGGGCCAGCGA
GGAGGCACCCCTGCTGGGGAATTGGTGTGGACACCACCTGCCACCACCCGTGACCTCAAGCCACAACCAG
CTTCTGCTTCTGCTGCACACAGACCGCAGCACCACCCGCAGGGGCTTCTCTGTGGCCTACATCGGAGTGG
TGCCCATGAACGTGAGCTGCTCCCGCACGGACTTCCAGATCCTGATCTCCACGCAGGCGCTGGCCCCGCT
GGAGCGGACCAAGGTCTACCTGGGCAGCCGGAGCTGTGCCGCCCAGGAGGTCGGCGGCAACCTCAGGATC
CAGGCCCGCTTTGATACCTGCGGCACTGAGTCTCAGAGAAGAAACAACACTTCAGTGATTGTCAGCGTGC
TGTACATCGACTTCTCAGCCGCGGGGCGGGAGGACATCCATGAGTACGAGGTCCGCTGTGAGCCACGGCG
CAAGGAGGCTTCTGTCCACCTGCTGTCTGGCTCTCACTGGCTGGGGCCCTATGCTGCCACTGCGGAGCAC
CTTCAGGAAGCACCACCCATGGATGAGGCGGAGGCACTGGAGGGCCCAGTGAGCATGGTGGCCCAGGATA
CCAGTGACATCGTCTTCCTGGGCCTTTGCATCCTGGCTGGAATCCTCATGGTTATTGCCATCGTGGTCTT
GATGCTGCTTTGA

Translation (540 aa):
MLAEWGACLLLAVALLGPGLQAQAMEGVKCGGVLSAPSGNFSSPNFPRLYPYNTECSWLIVVAEGSSVLL
TFHAFDLEYHDTCSFDFLEIYNGASPDKGNLLGRFCGKVPPPPFTSSWHVMSVIFHSDKHVASHGFSAGY
QKDVCGGVLTGLSGVLTSPEYPNNYPNSMECHWVIRAAGPAHVKLVFVDFQVEGNEECTYDYVAVLGGPG
PTRGHHYCGSTRPPTLVSLGHELQVVFKSDFNIGGRGFKAYYFSGECQEVYMAMRGNFSSPQYPSSYPNN
IRCHWTIRLPPGYQVKVFFLDLDLEEPNSLTKTCDFDHLAAFDGASEEAPLLGNWCGHHLPPPVTSSHNQ
LLLLLHTDRSTTRRGFSVAYIGVVPMNVSCSRTDFQILISTQALAPLERTKVYLGSRSCAAQEVGGNLRI
QARFDTCGTESQRRNNTSVIVSVLYIDFSAAGREDIHEYEVRCEPRRKEASVHLLSGSHWLGPYAATAEH
LQEAPPMDEAEALEGPVSMVAQDTSDIVFLGLCILAGILMVIAIVVLMLL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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