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Report for CCDS85731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85731.1 Public Mus musculus 9 Fbxw27 23 108 98 CCDS HistoryNCBI Gene:76998Re-query CCDS DB by CCDS ID:85731.1Re-query CCDS DB by GeneID:76998See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197125.2 ENSMUSP00000148376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197125.2Link to Ensembl Protein Viewer:ENSMUSP00000148376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197125Re-query CCDS DB by Protein ID:ENSMUSP00000148376
Original member Current member NCBI NM_001303004.1 NP_001289933.1 Accepted alive Link to Nucleotide Sequence:NM_001303004.1Link to Protein Sequence:NP_001289933.1Re-query CCDS DB by Nucleotide ID:NM_001303004Re-query CCDS DB by Protein ID:NP_001289933Link to BLAST:NP_001289933.1

Chromosomal Locations for CCDS 85731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109766202 109766210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109779564 109779773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109788021 109788139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109789325 109789488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109789679 109789716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109790530 109790619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGAGACCCATTTGCCTAGTTTGCCGTTGATGAAAATCTTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGTTGCCCAAGTGAACAAGAACTGGAATGCACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGCTTTTCTGTGACATGGTCACCCTACAGCTCCAGGACAAAGAGACATGGAAGCAGTTCTTC
GTTTACCGAACGTGGCAAGAACACTCCAAGACCCGGGCAAATCCACGAGATTTCACTTACAAGGAAATTC
CTTTGCAATATGGACCTTGTGGCTATGCATGTTATATCTCAGGGTGTGGCATAACAAGAAAGGGACAAGA
CAAGTCTGTTGTCTGTATGGTGAATTCCAAGAACACGATTTCCACCTGGGATGTTCACAAGAGCGTTATA
ACCTGGGTAAGCCCAGAACAGCCGGCAAGTATCAAGCTGTTGACTACCCTCCCTGAGATGCACATTGCAG
TCACTGTAGATATTCAATCAACTATCAAACTGTGGGACTGTCACAACAGGGAAGCTCTGGCGACTAACAT
CCTGGAATCTCCATGCAAATCACTGAAAGCTGTCATTACCAAGGATGACCCGATTGTCTTGCTTCATTAA

Translation (209 aa):
METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFF
VYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVI
TWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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