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Report for CCDS8553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8553.1 Public Homo sapiens 12 LPAR5 24 110 108 CCDS HistoryNCBI Gene:57121Re-query CCDS DB by CCDS ID:8553.1Re-query CCDS DB by GeneID:57121See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329858.9 ENSP00000327875.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329858.9Link to Ensembl Protein Viewer:ENSP00000327875.4Re-query CCDS DB by Nucleotide ID:ENST00000329858Re-query CCDS DB by Protein ID:ENSP00000327875
Original member Current member EBI ENST00000431922.1 ENSP00000393098.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431922.1Link to Ensembl Protein Viewer:ENSP00000393098.1Re-query CCDS DB by Nucleotide ID:ENST00000431922Re-query CCDS DB by Protein ID:ENSP00000393098
Original member Current member NCBI NM_001142961.1 NP_001136433.1 Accepted alive Link to Nucleotide Sequence:NM_001142961.1Link to Protein Sequence:NP_001136433.1Re-query CCDS DB by Nucleotide ID:NM_001142961Re-query CCDS DB by Protein ID:NP_001136433Link to BLAST:NP_001136433.1
Original member Current member NCBI NM_020400.6 NP_065133.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020400.6Link to Protein Sequence:NP_065133.1Re-query CCDS DB by Nucleotide ID:NM_020400Re-query CCDS DB by Protein ID:NP_065133Link to BLAST:NP_065133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136433.1 372 Q9H1C0 372 100% 0 0
NP_065133.1 372 Q9H1C0 372 100% 0 0

Chromosomal Locations for CCDS 8553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6620130 6621248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTTAGCCAACAGCTCCTCAACCAACAGTTCTGTTCTCCCGTGTCCTGACTACCGACCTACCCACCGCC
TGCACTTGGTGGTCTACAGCTTGGTGCTGGCTGCCGGGCTCCCCCTCAACGCGCTAGCCCTCTGGGTCTT
CCTGCGCGCGCTGCGCGTGCACTCGGTGGTGAGCGTGTACATGTGTAACCTGGCGGCCAGCGACCTGCTC
TTCACCCTCTCGCTGCCCGTTCGTCTCTCCTACTACGCACTGCACCACTGGCCCTTCCCCGACCTCCTGT
GCCAGACGACGGGCGCCATCTTCCAGATGAACATGTACGGCAGCTGCATCTTCCTGATGCTCATCAACGT
GGACCGCTACGCCGCCATCGTGCACCCGCTGCGACTGCGCCACCTGCGGCGGCCCCGCGTGGCGCGGCTG
CTCTGCCTGGGCGTGTGGGCGCTCATCCTGGTGTTTGCCGTGCCCGCCGCCCGCGTGCACAGGCCCTCGC
GTTGCCGCTACCGGGACCTCGAGGTGCGCCTATGCTTCGAGAGCTTCAGCGACGAGCTGTGGAAAGGCAG
GCTGCTGCCCCTCGTGCTGCTGGCCGAGGCGCTGGGCTTCCTGCTGCCCCTGGCGGCGGTGGTCTACTCG
TCGGGCCGAGTCTTCTGGACGCTGGCGCGCCCCGACGCCACGCAGAGCCAGCGGCGGCGGAAGACCGTGC
GCCTCCTGCTGGCTAACCTCGTCATCTTCCTGCTGTGCTTCGTGCCCTACAACAGCACGCTGGCGGTCTA
CGGGCTGCTGCGGAGCAAGCTGGTGGCGGCCAGCGTGCCTGCCCGCGATCGCGTGCGCGGGGTGCTGATG
GTGATGGTGCTGCTGGCCGGCGCCAACTGCGTGCTGGACCCGCTGGTGTACTACTTTAGCGCCGAGGGCT
TCCGCAACACCCTGCGCGGCCTGGGCACTCCGCACCGGGCCAGGACCTCGGCCACCAACGGGACGCGGGC
GGCGCTCGCGCAATCCGAAAGGTCCGCCGTCACCACCGACGCCACCAGGCCGGATGCCGCCAGTCAGGGG
CTGCTCCGACCCTCCGACTCCCACTCTCTGTCTTCCTTCACACAGTGTCCCCAGGATTCCGCCCTCTGA

Translation (372 aa):
MLANSSSTNSSVLPCPDYRPTHRLHLVVYSLVLAAGLPLNALALWVFLRALRVHSVVSVYMCNLAASDLL
FTLSLPVRLSYYALHHWPFPDLLCQTTGAIFQMNMYGSCIFLMLINVDRYAAIVHPLRLRHLRRPRVARL
LCLGVWALILVFAVPAARVHRPSRCRYRDLEVRLCFESFSDELWKGRLLPLVLLAEALGFLLPLAAVVYS
SGRVFWTLARPDATQSQRRRKTVRLLLANLVIFLLCFVPYNSTLAVYGLLRSKLVAASVPARDRVRGVLM
VMVLLAGANCVLDPLVYYFSAEGFRNTLRGLGTPHRARTSATNGTRAALAQSERSAVTTDATRPDAASQG
LLRPSDSHSLSSFTQCPQDSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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