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Report for CCDS85028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85028.1 Public Mus musculus 6 Exoc4 23 108 98 CCDS HistoryNCBI Gene:20336Re-query CCDS DB by CCDS ID:85028.1Re-query CCDS DB by GeneID:20336See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090381.10 ENSMUSP00000087859.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090381.10Link to Ensembl Protein Viewer:ENSMUSP00000087859.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090381Re-query CCDS DB by Protein ID:ENSMUSP00000087859
Original member Current member NCBI NM_001347089.2 NP_001334018.1 Accepted alive Link to Nucleotide Sequence:NM_001347089.2Link to Protein Sequence:NP_001334018.1Re-query CCDS DB by Nucleotide ID:NM_001347089Re-query CCDS DB by Protein ID:NP_001334018Link to BLAST:NP_001334018.1

Chromosomal Locations for CCDS 85028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33249153 33249238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33265940 33266129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33277187 33277381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33296733 33296917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33305285 33305394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33332211 33332454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33347783 33347957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33438380 33438525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33441951 33442039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33475997 33476145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGCGGCAGAAGCAGCTGGTGGGAAATACAGGAGCACAGTCAGCAAAAGCAAAGACCCCTCGGGGCTGC
TCATCTCGGTGATCAGGACTCTGTCTACCAGTGATGATGTTGAAGACCGAGAAAATGAGAAAGGTCGCCT
TGAAGAAGCCTATGAGAAGTGTGACCGTGACCTGGATGAATTGATCGTTCAGCACTACACAGAATTGACC
ACAGCCATTCGCACATACCAGAGTATCACAGAACGCATCACTAACTCGAGGAATAAAATCAAGCAGGTCA
AAGAGAATCTGCTTTCCTGCAAGATGCTGCTGCATTGCAAACGGGATGAGCTTCGTAAGCTGTGGATTGA
AGGAATCGAGCATAAGCACGTCCTGAACCTACTGGATGAGATTGAGAACATCAAGCAAGTGCCTCAAAAG
CTGGAACAGTGCATGGCCAGCAAGCACTACCTCAGCGCCACCGACATGCTGGTGTCAGCAGTGGAGTCCC
TGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAA
CCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAG
CGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTT
CAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAG
GGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATG
GGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTC
TGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGG
AGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTT
AATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACAC
AGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCT
GTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCC
AGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCA
AGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAG
TCGGAGTGGAGAACTCCAGGTCTTTCCAGCATGTTTTCTGCAGTGTTACCTGATCCCTGAGGGCAGAGAT
TTGATGGAGACATCCCGCATAGGACTGAAAGTCGCAAGATCTCTCCCTGTCCACACGTTCTGTGGTTGTA
GACCTTTGTATTTGTCACATCTACTGTAG

Translation (522 aa):
MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELT
TAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQK
LEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIEELHRHLYIKSTSRVVQ
RNKEKGKMSSHGKDPSPGPLIDVSNIPTPRKFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFM
GILIQGLARLKKIPETVKAIKERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKF
NAVATAHSVVLGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYA
STGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQVFPACFLQCYLIPEGRD
LMETSRIGLKVARSLPVHTFCGCRPLYLSHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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