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Report for CCDS84808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84808.1 Public Mus musculus 4 Usp48 23 108 98 CCDS HistoryNCBI Gene:170707Re-query CCDS DB by CCDS ID:84808.1Re-query CCDS DB by GeneID:170707See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105840.7 ENSMUSP00000101466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105840.7Link to Ensembl Protein Viewer:ENSMUSP00000101466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105840Re-query CCDS DB by Protein ID:ENSMUSP00000101466
Original member NCBI NM_001347227.2 NP_001334156.1 Updated not alive Link to Nucleotide Sequence:NM_001347227.2Link to Protein Sequence:NP_001334156.1Re-query CCDS DB by Nucleotide ID:NM_001347227Re-query CCDS DB by Protein ID:NP_001334156
Current member NCBI NM_001347227.3 NP_001334156.1 Accepted alive Link to Nucleotide Sequence:NM_001347227.3Link to Protein Sequence:NP_001334156.1Re-query CCDS DB by Nucleotide ID:NM_001347227Re-query CCDS DB by Protein ID:NP_001334156Link to BLAST:NP_001334156.1

Chromosomal Locations for CCDS 84808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137594383 137594516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137604523 137604643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137605752 137605908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137606689 137606816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137608058 137608182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137608998 137609106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137610690 137610823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137611706 137611788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137613682 137613861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137615713 137615841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137616358 137616507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137621062 137621259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137623274 137623388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137625157 137625287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137628174 137628245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137633114 137633238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137633343 137633465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137633833 137633894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137634898 137635008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137637760 137637890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137638156 137638262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137639206 137639310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137644343 137644498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137650293 137650418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137652958 137653006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137655223 137655249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137656122 137656144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGGCTCCGCGGCTGCAGCTGGAGAAGGCGGCCTGGCGCTGGGCGGAGACGGTGCGGCCCGAGGAGGTGT
CGCAGGAGCACATCGAGACCGCCTACCGCATCTGGCTGGAGCCTTGTATCCGAGGCGTGTGCAGAAGAAA
CTGCAGAGGAAACCCGAATTGCTTGGTTGGCATTGGCGAGCACATTTGGTTAGGAGAGATAGATGAGAAT
AGTTTTCATAGCATTGATGATCCCAACTGTGAGAGGAGGAAAAAGAATTCCTTTGTGGGCTTGACTAACC
TGGGAGCCACCTGCTACGTCAACACCTTTCTCCAGGTGTGGTTCCTCAACTTGGAGCTTCGGCAGGCGCT
GTACTTATGCCCCAGCACCTGCAGTGATTACACGAAGGGAGATGGGATCCATGGGGGAAAAGATTATGAG
CCTCAGACAATTTGTGAGCATCTTCAGTACTTGTTTGCTTTGTTGCAAAACAGTAACAGACGATACATCG
ATCCTTCAGGATTTGTTAAAGCCTTGGGCTTAGATACTGGGCAGCAGCAGGATGCACAAGAGTTTTCCAA
GCTCTTTATGTCGCTGTTGGAAGACACTTTGTCTAAACAGAAGAACCCGGATGTTCGGAATGTTGTGCAG
CAGCAGTTCTGTGGAGAATATGCCTATGTGACTGTGTGCAATCAGTGTGGCCGAGAGTCTAAGCTTGTAT
CGAAGTTCTATGAACTGGAGTTAAACATCCAAGGCCACAAGCAGTTAACAGACTGCATCTCAGAGTTCCT
GAAGGAAGAACGATTAGAAGGAGACAATCGATACTTCTGTGAAAACTGTCAGAGCAAACAGAATGCTACA
CGGAAAATCCGGCTTCTGAGCCTCCCTTGCACTCTGAACTTGCAGCTGATGCGTTTCGTGTTTGACAGGC
AAACTGGACACAAGAAGAAGCTCAATGCATACATCGGCTTCTCAGAGAGTCTAGATATGGAGCCTTACGT
GGAGCACAAAGGCGGGTCCTTCGTGTACGAGCTCAGTGCCGTCCTCATCCACAGAGGAGTCAGCGCCTAT
TCTGGCCACTACATCGCACACGTGAAAGACCCTCAGTCTGGAGAATGGTACAAGTTCAATGACGAGGACA
TAGAGAAGATGGAGGGCAAGAAGCTACAGCTAGGGATTGAGGAAGATCTAGCAGAACCTTCTAAATCCCA
GACCCGTAAACCCAAGTGTGGCAAAGGAACTCACTGCTCCCGAAATGCATACATGCTGGTTTATAGGCTG
CAAGCCCAGGAAAAGAACCACACAATGGTTCAAGTCCCAGCCTTTCTTCAAGAGCTGGTAGATCGTGATA
ATTCCAAATTCGAGGAGTGGTGTGTAGAAATGGCCGAGATGCGCAAGCAGAGTGTGGACAAAGGCAAAGC
GAAGCACGAGGAGGTGAAGGAGCTGTACCAAAGGTTGCCTGCTGGAGCTGAGCCCTATGAGTTTGTCTCT
CTTGAATGGCTGCAGAAGTGGTTGGACGAGTCAACACCCACCAAACCGATTGATAATAATGCTTGCCTGT
GTTCCCACGACAAGCTTCATCCTGATAAAATATCAATTATGAAGAGAATATCGGAATATGCGGCTAACAT
TTTCTATAGTCGATATGGAGGAGGTCCAAGACTAACTGTGAAAGCCCTTTGTAAGGACTGCGTCGTGGAA
CGCTGCCGTGTCCTGCGCCTGAAGAATCAGCTGAATGAAGATTACAAAGCTGTCAACAATTTGCTGAAAT
CGACAATGAAGGGCAGTGATGGATTTTGGGTAGGAAAGTCTTCCTTGCGTAGCTGGCGCCAGCTGGCTCT
TGAACAACTAGATGAGCAAGATGGTGAGGCGGAGCAAAGCAACGGGAAGATAAACGGGAGCACCTTCAAT
AAAGATGAATCAAAGGAAGAAAAGAAAGAAGAGGAGGAGGAATTAAATTTTAATGAAGACATTCTGTGTC
CTCATGGAGAGTTAAGCATATCTGAAAATGAAAGAAGGCTGGTTTCTCAGGAGGCTTGGAGCAAGCTGCA
GCAGTACTTCCCAAAGGCTCCCGAGTTCCCAAGTTACAGAGAGTGCTGCTCGCAGTGCAAGATACTAGAA
CGAGAAGGTGAAGAAAACGAAGCCTTGCATAAGATGATAGCAAACGAGCAGAAGACCTCACTTCCAAACT
TGTTCCAGGACAAAAACAGACCATGTCTCAGTAACTGGCCAGAGGACACGGATGCTCTCTATATTGTGTC
GCACTTCTTTTTAGATGAATGGCGGAAATTTGTTAGAAAGCCTGCAAGGTCTGCTCCTGTGTCGTCAATT
GGGAATGCTGCCCTTCTGTGTCCACATGGAGGACTCATGTTTACATTTCCTTCCCTCACCAAAGAAGACT
CGAAACTTATAGCTCTCATATGGCCCAGCGAATGGCAAATGATTCAAAAGCTCTTTGTTGTGGATAAAGT
AATTAAAATCACAAGAATTGAAGTGGGAGACGTGAATCCTTCTCAAACACAGTATATTTCTGAACCTAGT
CTCTGTCCAGATTGCAGAGAAGGTCTGCTGTGCCAGCAGCAGAGGGACCTTCGAGAGTATACCCAAGCCA
CCATCTATGTCCACAAGGTTGTGGATAACAAAAAGGTGATGAAGGACTCGGCCCCCGAGTTGAATGTGAG
TAGTTCTGAGACGGAAGAAGACAAGGAGGAGGCTAAGCCAGATGGGGAGAAGGATCCTGACTTTAATCAA
AGCAATGGAAGTACCAAGCGACAGAAGACATCCCAACAGGGCTATGTGGCCTACCAGAAGCAGGTCATCC
GGAGGAGCACGAGGCACAGGAAGGTTCGGGGAGAGAAGGCACTGTTGGTGTCTGCCAACCAGACGTTAAA
AGAATTGAAGATTCAGATCATGCACGCATTTTCAGTTGCTCCATTTGACCAGAATTTGTCAATTGATGGA
AAGATTTTAAACGACGACTGTGCCACCCTTGGTACCCTCGGCGTCATTCCTGAGTCTGTCATTTTGTTAA
AGGCTGATGAACCAATTGCAGACTACGCTGCAATGGATGATGTCATGCAAGTTTGTATGCCGGAAGAGGG
CTTTAAAGGTACGGGCCTGCTCGGACATTAA

Translation (1036 aa):
MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDEN
SFHSIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYE
PQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ
QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSKQNAT
RKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHKGGSFVYELSAVLIHRGVSAY
SGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRL
QAQEKNHTMVQVPAFLQELVDRDNSKFEEWCVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVS
LEWLQKWLDESTPTKPIDNNACLCSHDKLHPDKISIMKRISEYAANIFYSRYGGGPRLTVKALCKDCVVE
RCRVLRLKNQLNEDYKAVNNLLKSTMKGSDGFWVGKSSLRSWRQLALEQLDEQDGEAEQSNGKINGSTFN
KDESKEEKKEEEEELNFNEDILCPHGELSISENERRLVSQEAWSKLQQYFPKAPEFPSYRECCSQCKILE
REGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDALYIVSHFFLDEWRKFVRKPARSAPVSSI
GNAALLCPHGGLMFTFPSLTKEDSKLIALIWPSEWQMIQKLFVVDKVIKITRIEVGDVNPSQTQYISEPS
LCPDCREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQ
SNGSTKRQKTSQQGYVAYQKQVIRRSTRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDG
KILNDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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