NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84633.1 Public Mus musculus 3 Fgg 23 108 98 CCDS HistoryNCBI Gene:99571Re-query CCDS DB by CCDS ID:84633.1Re-query CCDS DB by GeneID:99571See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194175.1 ENSMUSP00000141648.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194175.1Link to Ensembl Protein Viewer:ENSMUSP00000141648.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194175Re-query CCDS DB by Protein ID:ENSMUSP00000141648
Original member Current member NCBI NM_001317105.1 NP_001304034.1 Accepted alive Link to Nucleotide Sequence:NM_001317105.1Link to Protein Sequence:NP_001304034.1Re-query CCDS DB by Nucleotide ID:NM_001317105Re-query CCDS DB by Protein ID:NP_001304034Link to BLAST:NP_001304034.1

Chromosomal Locations for CCDS 84633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 83007908 83007982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008153 83008197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008374 83008557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83008648 83008741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83010064 83010194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83010456 83010589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83011345 83011529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83012764 83013041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83014138 83014343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGAGTTGGTCTTTGCAGCCCCCGAGTTTCCTTCTTTGCTGCCTGCTTTTACTGTTCTCTCCAACGGGCC
TGGCATATGTGGCTACCAGAGATAACTGTTGCATCCTAGATGAGAGATTCGGTAGTTTCTGCCCAACCAC
CTGTGGTATCGCAGATTTCCTGTCTTCTTACCAAACCGACGTGGACAATGATCTCCGAACGCTGGAAGAC
ATCTTATTCCGGGCTGAAAACAGAACCACAGAAGCCAAAGAACTGATCAAAGCAATTCAGGTTTACTACA
ACCCAGACCAACCCCCAAAGCCAGGTATGATAGACAGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGA
AATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCGGTATTTACAGGAAATCTATAAT
TCAAATAACCAGAAGATCACAAACCTAAAACAGAAGGTAGCCCAGCTTGAAGCCCAGTGCCAGGAGCCTT
GCAAGGACTCTGTGCAAATCCATGACACAACTGGAAAAGATTGTCAGGAAATTGCCAACAAGGGCGCCAA
AGAAAGTGGACTTTACTTCATTCGACCTTTGAAAGCTAAGCAGCAGTTCTTAGTGTACTGTGAAATCGAC
GGATCTGGAAATGGTTGGACCGTATTGCAGAAGAGGATTGATGGCAGTTTGGATTTCAAGAAGAACTGGA
TTCAGTATAAAGAAGGATTTGGACACCTGTCGCCTACTGGCACCACAGAGTTTTGGCTGGGAAATGAGAA
GATTCATTTGATAAGCATGCAGTCCACAATTCCATATGCACTGAGAATACAGCTCAAAGACTGGAATGGC
AGAACCAGCACTGCGGACTATGCCATGTTCAGGGTGGGTCCCGAGTCTGACAAATACCGCCTGACCTATG
CCTACTTCATTGGTGGAGATGCCGGGGATGCCTTCGACGGCTACGATTTCGGCGATGACCCCAGTGACAA
GTTTTTCACATCCCACAACGGCATGCAGTTCAGTACCTGGGACAACGACAACGATAAGTTTGAAGGCAAC
TGTGCGGAACAGGATGGATCCGGCTGGTGGATGAACAAATGTCACGCAGGCCACCTCAATGGAGTTTATC
ACCAAGGTGGTACTTACTCAAAATCATCTACTACTAATGGTTTCGACGACGGCATTATTTGGGCGACCTG
GAAAAGCCGCTGGTATTCTATGAAGGAAACCACCATGAAGATAATTCCCTTCAACAGACTCTCCATCGGA
GAAGGACAGCAGCATCACATGGGGGGATCCAAACAGGTCAGCGTGGATCATGAAGTTGAAATTGAATACT
GA

Translation (443 aa):
MSWSLQPPSFLLCCLLLLFSPTGLAYVATRDNCCILDERFGSFCPTTCGIADFLSSYQTDVDNDLRTLED
ILFRAENRTTEAKELIKAIQVYYNPDQPPKPGMIDSATQKSKKMVEEIVKYEALLLTHETSIRYLQEIYN
SNNQKITNLKQKVAQLEAQCQEPCKDSVQIHDTTGKDCQEIANKGAKESGLYFIRPLKAKQQFLVYCEID
GSGNGWTVLQKRIDGSLDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISMQSTIPYALRIQLKDWNG
RTSTADYAMFRVGPESDKYRLTYAYFIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGN
CAEQDGSGWWMNKCHAGHLNGVYHQGGTYSKSSTTNGFDDGIIWATWKSRWYSMKETTMKIIPFNRLSIG
EGQQHHMGGSKQVSVDHEVEIEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH