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Report for CCDS84598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84598.1 Public Mus musculus 2 Cdh4 23 108 98 CCDS HistoryNCBI Gene:12561Re-query CCDS DB by CCDS ID:84598.1Re-query CCDS DB by GeneID:12561See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108911.1 ENSMUSP00000104539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108911.1Link to Ensembl Protein Viewer:ENSMUSP00000104539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108911Re-query CCDS DB by Protein ID:ENSMUSP00000104539
Original member NCBI NM_001316723.1 NP_001303652.1 Updated not alive Link to Nucleotide Sequence:NM_001316723.1Link to Protein Sequence:NP_001303652.1Re-query CCDS DB by Nucleotide ID:NM_001316723Re-query CCDS DB by Protein ID:NP_001303652
Current member NCBI NM_001316723.2 NP_001303652.1 Accepted alive Link to Nucleotide Sequence:NM_001316723.2Link to Protein Sequence:NP_001303652.1Re-query CCDS DB by Nucleotide ID:NM_001316723Re-query CCDS DB by Protein ID:NP_001303652Link to BLAST:NP_001303652.1

Chromosomal Locations for CCDS 84598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 179442622 179442678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179444700 179444811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179780254 179780480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179797458 179797628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179842969 179843124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179847220 179847501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGACCACAGGCTCTGTGCTGCCGCTGCTGCTGCTCGGGCTCTCGGGCGCGCTCCGGGCCCACCGTGAGG
ATCTTACAGTCAGAGAGGCCTGTAAGGCTGGCTTCTCCGAAGAAGGCTACACTGCGTTGATCTCCCCGAA
TGTCCTGGAAGGAGAGAAACTACTCAAAGTCGAGTTCAGCAGCTGCGTGGGCACCAAAGGTATGCAGTAT
GAGACCAACAGCTTGGACTTCAAAGTCGGGGCGGATGGGACAGTCTTCGCCACTAGGGAGTTGAAGATCC
CCTCAGAGCAGGTGGCCTTTACCGTCACTGCGCGGGAACGCCAGAGTGCTGAGCAATGGGCTGCTATGGT
GCGGCTGCTGGTAGCCCAGACATCGTCAGCACACTCTGAACACAAGAAAGGGCAGACAGTGGCCCTAGAC
CCCTCTCAGCCGCCAAATGACACACTGCTGCCATGGCCTCAACATCAGAGCTCTGGTGGGCTGAGGAGAC
AGAAGCGTGACTGGGTCATCCCACCCATCAACGTTCCCGAGAACTCCCGTGGACCCTTCCCTCAGCAGCT
TGTCAGGATCAGGTCGGACAAAGACAATGACATCCCCATCCGCTACAGCATCACGGGTGTGGGCGCCGAC
CAGCCCCCCATGGAGGTCTTCAACATCGACTCTATGTCTGGCCGGATGTATGTCACTCGGCCCATGGACC
GGGAGGAAAGAGCCTCTTACCATCTCCGAGCCCACGCGGTGGATATGAACGGTAACAAGGTGGAGAATCC
TATTGACCTGTACATCTACGTCATTGACATGAACGACAACCGTCCCGAGTTCATCAACCAGGTCTACAAC
GGCTCTGTGGATGAGGGCTCCAAGCCAGGTGAGGCTTCCTGGGGACCCCACGCACTCCACGGGACATGGG
TCTGGGACTGTAACGTACAGCACTGCTGCCCAGTCTCACACACTTCGAGGTACAGAGAGTCTGCAGAGAG
CAGGCACTGTAGCAACAGAGAATAG

Translation (334 aa):
MTTGSVLPLLLLGLSGALRAHREDLTVREACKAGFSEEGYTALISPNVLEGEKLLKVEFSSCVGTKGMQY
ETNSLDFKVGADGTVFATRELKIPSEQVAFTVTARERQSAEQWAAMVRLLVAQTSSAHSEHKKGQTVALD
PSQPPNDTLLPWPQHQSSGGLRRQKRDWVIPPINVPENSRGPFPQQLVRIRSDKDNDIPIRYSITGVGAD
QPPMEVFNIDSMSGRMYVTRPMDREERASYHLRAHAVDMNGNKVENPIDLYIYVIDMNDNRPEFINQVYN
GSVDEGSKPGEASWGPHALHGTWVWDCNVQHCCPVSHTSRYRESAESRHCSNRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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