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Report for CCDS84417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84417.1 Public Mus musculus 19 Rab3il1 23 108 98 CCDS HistoryNCBI Gene:74760Re-query CCDS DB by CCDS ID:84417.1Re-query CCDS DB by GeneID:74760See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121418.7 ENSMUSP00000113828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121418.7Link to Ensembl Protein Viewer:ENSMUSP00000113828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121418Re-query CCDS DB by Protein ID:ENSMUSP00000113828
Original member Current member NCBI NM_001347429.1 NP_001334358.1 Accepted alive Link to Nucleotide Sequence:NM_001347429.1Link to Protein Sequence:NP_001334358.1Re-query CCDS DB by Nucleotide ID:NM_001347429Re-query CCDS DB by Protein ID:NP_001334358Link to BLAST:NP_001334358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334358.1 314 Q8VDV3-2 314 100% 0 0

Chromosomal Locations for CCDS 84417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10026726 10026785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10027384 10027479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10027560 10027637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10028285 10028503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10030150 10030278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10030369 10030481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10032353 10032452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10033744 10033810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10034457 10034539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAGGAGCTGAAGC
TAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGAC
AGCCAGCCTGTTTGAGGAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAG
CAGTTGAAGGAGGCTTGGGGCAAGATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCA
TCACATCCACACCAGCCTCTCCCAACCGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACC
CCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGG
CATATCCCTACCCCTGACAAAGAAGGCAAGGAGGTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGA
GAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTG
CCTTGACTTCACAGTGCAGGAGCTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATT
GAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAACACAT
GTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTA
CATCTCACCGTCCTCCCGGGCCAGGATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAG
CAAGGTCTGGTTCGGCAGGATGCTGAGCCGATGTTCTGGGAGATCATGAGGCTTCGGAAGGGCATGTCAC
TAGCCAAGCTTGGCTTCTTCCCCCAGGAGGCCTAG

Translation (314 aa):
MEIREKGSEFLKEELYKAQKELKLKDEECERLCKVRAQLEQELEELTASLFEEAHKMVREANMKQATSEK
QLKEAWGKIDMLQAEVTALKTLVITSTPASPNRELHPQLLSPTKAGPRKGHSRQKSTSSSLCPVVCPTAG
HIPTPDKEGKEVDTTLFAEFQAWRASPTLDKSCPFLERVYREDVGPCLDFTVQELSALVRTAVEDNTLTI
EPVASQTLPAVKVPTVECNNTNTCALSGLARTCHHRIRLGDSDSHYYISPSSRARITAVCNFFTYIRYIQ
QGLVRQDAEPMFWEIMRLRKGMSLAKLGFFPQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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