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Report for CCDS84292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84292.1 Public Mus musculus 17 Rasal3 23 108 98 CCDS HistoryNCBI Gene:320484Re-query CCDS DB by CCDS ID:84292.1Re-query CCDS DB by GeneID:320484See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137458.1 ENSMUSP00000123141.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137458.1Link to Ensembl Protein Viewer:ENSMUSP00000123141.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137458Re-query CCDS DB by Protein ID:ENSMUSP00000123141
Original member NCBI NM_001347343.1 NP_001334272.1 Updated not alive Link to Nucleotide Sequence:NM_001347343.1Link to Protein Sequence:NP_001334272.1Re-query CCDS DB by Nucleotide ID:NM_001347343Re-query CCDS DB by Protein ID:NP_001334272
Current member NCBI NM_001347343.2 NP_001334272.1 Accepted alive Link to Nucleotide Sequence:NM_001347343.2Link to Protein Sequence:NP_001334272.1Re-query CCDS DB by Nucleotide ID:NM_001347343Re-query CCDS DB by Protein ID:NP_001334272Link to BLAST:NP_001334272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334272.1 1043 Q8C2K5-2 1043 100% 0 0

Chromosomal Locations for CCDS 84292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32391080 32391235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32391336 32391399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32392046 32392203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32392398 32392788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32393523 32393641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32393741 32393942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32394038 32394274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32395075 32395219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32395822 32395966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32396348 32396884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32397310 32397408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32397494 32397620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32398021 32398091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32398917 32398978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32399085 32399163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32399290 32399429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32402436 32402507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32403056 32403383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3132 nt):
ATGGACCCACCGTTGCAGAGTGAAGAAGATTCCCAAACGCAGCCCTCGCTGCCCTCTCCGCTGACATCCT
ACCGCTGGCACACTGGAGGCAGTGGGGAAAAGGCTGCTGGAGGGTTCCGCTGGGGCCGCTTTGCAGGCTG
GGGAAGGGCCCTGAGCCATCAGGAGCCCATGGTGAACAGCCAGCCAGCCCCCAGATCTCTGTTTCGTCGG
GTCCTCTCTGCACCCCCTAAGGAGTCACGGTCCAATCGCCTCCGGTTTTCCAAGACCCTGTGGGGAAGGC
ACAAGAACGTGGCACCACTGGAACCCAAGCCAAATCCGAAGGCCCCAGAAAGGAGCAAGCAAGCCATGGT
TCCTGGAGTCAAAGGACAACTTTCAGGAGTCAGTTCTCTCCTTCAATTACAGCCAGAGCTGGAGTTGGTA
GCAGACCCAGATCTACCCGTTGCACAGATCCCTGAGCCTCCCACCCCGGACATGCCTGTTTGGAACATTG
ATGGCTTTACCCTTCTCGAAGGAAAGCTGGTGATGCTCGGTGAGGAGGAGGGTCCTCGCCAAATCCGAGT
GGGAAGCGCCAGTTCAGAGAACAGCATGCAGGCAGCTTTGGGGAACCTCAAGGATGCAGTTCGGACCCCT
GGAAAAACTGAGCCGGAAGCTGCTGGTTCCAACCAGGTCCACAATGTTCGGAAGTTACTCAAGAGGCTGA
AGGAGAAGAAAAGAGCCAAGTCAGAACTGGGAGCCTACACCCCTCGAGATGGACCTCCCAGTGCCCTCGG
TTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGTGCTGAGAGGGACGTGAGAGTCTGGCCA
CTGCATCCTAGCCTCTTGGGGGAGCCCTACTGCTTCCAGGTAACCTGGGCAGGTGGGAGCCTCTGTTTCT
CATGTCGCTCGAGCGCTGAGAGAGACCGTTGGATTGAGGACCTTCGTCGGCAGTTCCAGCCGAGCCAGGA
CAACGTGGAGCGGCAAGAGATGTGGCTGACGGTGTGGGTGCACGAGGCCAAAGGGCTACCCCGAGCAACT
GTACCCGGAGTGCGTGCGGAGCTGTGGTTGGATGGCGCGCTATTGGCGCGCACTGCCCCCCGTGCCGGCC
CAGGCCAACTCTTCTGGGCTGAACGCTTCCACTTCGAGGCGTTGCCACCTGCCCGTCGCCTGTCGCTGCG
GTTGCGCAGCGCAGGCCCGGCAGGGGCAACCGTGGGCAGGGTGGTGCTGGAGCTGGACGAGGTGAGCATC
CCCCGCGCGCCTGCCGCGGGCCTAGAGCGCTGGTTCCCGGTGCTTGGGGCGCCGGCAGGTGCGGTGCTAC
GAGCGCGGATCAGGGTGCGTTGTCTGCGCGTGCTGCCGTCGGAGCGCTATAAGGAGCTGGCCGAGTTCCT
CACCTTCCACTACGCGCGCCTGTGCGGGGCGCTGGAGCCGGCGCTGTCTGCTCAGGCCAAAGAGGAGCTG
GCAGCAGCCATGGTGCGCGTGCTACGAGCCACTGGCCGAGCGCAGGCATTGGTGACAGACCTAGGAACCG
CAGAGCTGGCACGCTGTGGAGGCCGTGAAGCACTGCTATTCCGAGAAAATACCTTAGCCACAAAGGCCAT
TGATGAATACATGAAACTGGTGGCACAGGAGTACCTCCAGGACACCCTGGGGCAGGTTGTGCGGTGTCTC
TGTGCCTCCACTGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCAGAGCTGCCAAAACACCAAG
CTAGACTGCGAGACAGCTGTGAGGAGGTTTTTGAAAACATCATCCATTCTTACAACTGTTTCCCAGCAGA
GCTGGGCTCCGTGTTCTCAAGTTGGCGTGAAGCATGCAAAGCACGAGGCTCTGAGGCCCTGGGCCCCCGG
CTGGTGTGTGCTTCCCTCTTCCTGAGGCTTTTATGCCCTGCCATCTTGGCACCTAGCCTCTTTGGCCTGG
CACCAGAGCACCCAGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAACCTCGC
CAACTGTGCCCCGTTTGGTGAGAAGGAAGCCTACATGGCGTTTATGAATAGCTTCCTGGAAGATCATGGA
CCAGCCATGCAACACTTCCTGGACCAGGTAGCTACGGTGGATGCAGATACCACACCCAGTGGCTACCAGG
GAAGTGGAGACCTGGCCCTTCAGTTAGCAGTTCTTCATGTCCAGCTCTGCACAATCTTTGCCGAACTTGA
CCAGAAAACCCAAGATAGCTTGGAACCACTACCCACCATCCTTCGAGCCATTGAGGAAGGCCGGCCTGTC
CCAGTGTCTGTACCAATGCGTCTTCCCCGGATCTCCACTCAGGTCCAATCCAGCTTCTTTTCAGGGGAGA
AACCCGGCTTCCTGGCACCCCGAGACCTCCCCAAGCACACTCCCCTCATTTCCAAGAGTCAATCTCTGCG
CAGCTTTCAAGGGGCAGGAAGCTGGGCCAGTCGGCGGCCAGATGAGGAGCGGCCCCAGAGGCGGCCGCGG
CCAGTGCTGCGCACACAGAGCGTCCCTGCCAGACGTCCTACCCACCGTCGCCCTTCTGCAGGTTCCAAGC
CGCGGCCCAAAGGCTCCCTACGCATGGGCCCCGCGCCTTGCGGACGGGCCTGGACTAGGGCTTCTGCCTC
GCTACCTCGGAAGCCATCGGTACCATGGCAGCGCCAAATGGACCAGCCGGGGGACCGATACCAAACTACG
GGAACGCACCGACCAGTGGGCAAGCTAGCAGAGATACAATGTGAGGTGGCTATATTCCGCGAGGCACAGA
AAGCTCTGTCCCTTCTGGTGGAGTCGTTGAGTACCCAAGTCCAAGCCTTGAAGGAGCAGCAGGAGCACTT
CCGCTGTCAGCTGCAGGATCTGTACTCCAGACTGGGAGCTGGTATCTCAAAGTTGGATTCTAAGGGTGGT
CTCCCAAGCAACGGAAGCCACAGGCTGAAAAGTCTGGAACAGCGCCTGACTGAGATGGAATGTTCTCAGG
ACCAGCTGAGGGATAGCCTCCAAAGCCTGCAACTTCTTTCAAAAACACCAGGATCTCGGAGCCAGCCCCT
GCCTCTCAAAGCACCATGTGTCAATGGAGCTGATCTGTCAATGGGCACTTGA

Translation (1043 aa):
MDPPLQSEEDSQTQPSLPSPLTSYRWHTGGSGEKAAGGFRWGRFAGWGRALSHQEPMVNSQPAPRSLFRR
VLSAPPKESRSNRLRFSKTLWGRHKNVAPLEPKPNPKAPERSKQAMVPGVKGQLSGVSSLLQLQPELELV
ADPDLPVAQIPEPPTPDMPVWNIDGFTLLEGKLVMLGEEEGPRQIRVGSASSENSMQAALGNLKDAVRTP
GKTEPEAAGSNQVHNVRKLLKRLKEKKRAKSELGAYTPRDGPPSALGSRESLATLSELDLGAERDVRVWP
LHPSLLGEPYCFQVTWAGGSLCFSCRSSAERDRWIEDLRRQFQPSQDNVERQEMWLTVWVHEAKGLPRAT
VPGVRAELWLDGALLARTAPRAGPGQLFWAERFHFEALPPARRLSLRLRSAGPAGATVGRVVLELDEVSI
PRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYARLCGALEPALSAQAKEEL
AAAMVRVLRATGRAQALVTDLGTAELARCGGREALLFRENTLATKAIDEYMKLVAQEYLQDTLGQVVRCL
CASTEDCEVDPSKCPTPELPKHQARLRDSCEEVFENIIHSYNCFPAELGSVFSSWREACKARGSEALGPR
LVCASLFLRLLCPAILAPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMAFMNSFLEDHG
PAMQHFLDQVATVDADTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTQDSLEPLPTILRAIEEGRPV
PVSVPMRLPRISTQVQSSFFSGEKPGFLAPRDLPKHTPLISKSQSLRSFQGAGSWASRRPDEERPQRRPR
PVLRTQSVPARRPTHRRPSAGSKPRPKGSLRMGPAPCGRAWTRASASLPRKPSVPWQRQMDQPGDRYQTT
GTHRPVGKLAEIQCEVAIFREAQKALSLLVESLSTQVQALKEQQEHFRCQLQDLYSRLGAGISKLDSKGG
LPSNGSHRLKSLEQRLTEMECSQDQLRDSLQSLQLLSKTPGSRSQPLPLKAPCVNGADLSMGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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