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Report for CCDS84024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84024.1 Public Mus musculus 13 Cltb 23 108 98 CCDS HistoryNCBI Gene:74325Re-query CCDS DB by CCDS ID:84024.1Re-query CCDS DB by GeneID:74325See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049575.7 ENSMUSP00000053371.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049575.7Link to Ensembl Protein Viewer:ENSMUSP00000053371.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049575Re-query CCDS DB by Protein ID:ENSMUSP00000053371
Original member Current member NCBI NM_001347512.1 NP_001334441.1 Accepted alive Link to Nucleotide Sequence:NM_001347512.1Link to Protein Sequence:NP_001334441.1Re-query CCDS DB by Nucleotide ID:NM_001347512Re-query CCDS DB by Protein ID:NP_001334441Link to BLAST:NP_001334441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334441.1 229 Q6IRU5-1 229 100% 0 0

Chromosomal Locations for CCDS 84024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54593871 54594042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54597026 54597079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54598722 54598833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54599044 54599161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54606644 54606690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54611078 54611264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCTGAGGACTTCGGCTTCTTCTCATCGTCGGAGAGCGGGGCCCCGGAGGCCGCCGAGGAGGACCCAG
CGGCCGCCTTCCTGGCCCAGCAGGAAAGCGAGATTGCTGGCATCGAGAATGACCCGGGTTTCGGGGCACC
TGCCGCCAGCCAGGTGGCCTCTGCGCAGCCGGGACTCGCGAGCGGGGCTGGTTCAGAGGACATGAGTACT
ACAGTCAATGGAGATGTGTTTCAGGAGGCTAACGGGCCTGCCGATGGCTACGCTGCGATTGCCCAGGCGG
ACAGGTTGACTCAGGAGCCCGAGAGCATCCGGAAGTGGAGAGAGGAGCAGAAGAAAAGGCTGCAGGAGTT
AGACGCTGCCTCGAAGGTGACCGAACAGGAGTGGCGGGAGAAGGCCAAGAAAGACCTGGAGGAGTGGAAC
CAGCGCCAAAGTGAACAGGTTGAGAAGAACAAGATCAACAACAGGATCGCTGACAAAGCGTTCTACCAGC
AGCCAGATGCTGATACCATTGGCTATGTGGCATCGGAAGAGGCTTTTGTGAAAGAATCCAAGGAGGAGAC
CCCGGGCACAGAGTGGGAGAAGGTAGCCCAGCTGTGTGACTTCAATCCCAAGAGCAGCAAGCAGTGTAAA
GATGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAAACACCACTGTCCCGCTAG

Translation (229 aa):
MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMST
TVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWN
QRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCK
DVSRLRSVLMSLKQTPLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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