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Report for CCDS83959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83959.1 Public Mus musculus 12 Etv1 23 108 98 CCDS HistoryNCBI Gene:14009Re-query CCDS DB by CCDS ID:83959.1Re-query CCDS DB by GeneID:14009See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160856.7 ENSMUSP00000125692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160856.7Link to Ensembl Protein Viewer:ENSMUSP00000125692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160856Re-query CCDS DB by Protein ID:ENSMUSP00000125692
Original member Current member NCBI NM_001347379.1 NP_001334308.1 Accepted alive Link to Nucleotide Sequence:NM_001347379.1Link to Protein Sequence:NP_001334308.1Re-query CCDS DB by Nucleotide ID:NM_001347379Re-query CCDS DB by Protein ID:NP_001334308Link to BLAST:NP_001334308.1

Chromosomal Locations for CCDS 83959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 38780935 38780979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38781799 38781886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38783238 38783285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38827778 38827907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38831081 38831269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38835069 38835316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38852220 38852288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38854160 38854228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38856941 38857110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38861287 38861388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38865548 38865769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGATGGATTTTATGACCAGCAAGTGCCTTACGTGGTCACCAACAGTCAGCGTGGGAGAAACTGTACCG
AGAAACCAACAAATGTCAGGAAAAGAAAATTCATTAACAGAGATCTGGCTCATGATTCAGAAGAACTCTT
TCAAGATCTGAGTCAGTTACAAGAAACATGGCTTGCTGAAGTGGCTTTTCATGGCCTCCCACTGAAAATC
AAGAAAGAACCCCACAGCCCATGTTCAGAACTCGGGTCTGCTTGCAGTCAAGAGCAGCCCTTTAAATTCA
GCTATGGAGAAAAGTGCCTGTACAATGTCAGTGCCTATGATCAGAAGCCACAAGTGGGAATGAGGCCCTC
CAATCCCCCGACACCATCCAGCACTCCAGTGTCCCCACTACACCATGCATCTCCAAACACAGCTCATACT
CCGAAACCTGACCGGGCCTTCCCAGCTCACCTCCCTCCTTCTCAGTCCATACCAGACAGCACCTACCCCA
TGGACCACAGATTTCGCCGCCAGCTTTCTGAACCCTGTAATTCTTTTCCTCCTTTGCCGACAATGCCAAG
GGAAGGGCGTCCTATGTACCAACGCCAGATGTCTGAGCCAAACATCCCCTTCCCACCACAAGGCTTTAAG
CAGGAGTACCACGACCCAGTCTATGAACATACCACCATGGTTGGCGGTGCAGCCAGCCAAAGCTTCCCCC
CTCCTTTGATGATCAAACAGGAACCCAGAGATTTTGCATATGACTCAGAAGTGCCTAGCTGCCACTCCAT
TTATATGAGGCAAGAAGGCTTCCTGGCTCATCCAAGCAGAACAGAAGGCTGCATGTTTGAGAAGGGTCCC
AGGCAGTTCTATGATGACACCTGTGTGGTCCCGGAGAAGTTCGATGGGGACATTAAGCAAGAGCCTGGAA
TGTACCGGGAAGGACCCACGTACCAGAGGCGAGGATCCCTCCAGCTCTGGCAGTTTTTGGTAGCTCTTCT
GGATGACCCTTCAAATTCTCATTTCATTGCCTGGACTGGACGAGGCATGGAATTTAAACTGATTGAGCCC
GAAGAGGTGGCCCGGCGTTGGGGCATTCAGAAGAACAGGCCGGCGATGAACTATGACAAACTTAGTCGTT
CTCTCCGCTATTATTATGAGAAGGGAATCATGCAAAAGGTGGCTGGAGAAAGATACGTGTACAAATTTGT
GTGTGACCCGGAAGCCCTTTTCTCTATGGCCTTTCCGGATAACCAGCGCCCACTGCTGAAGACGGACATG
GAACGTCACATCAACGAAGAGGACACAGTGCCTCTGTCTCACTTTGATGAGAGCATGACCTACATGCCCG
AAGGGGGCTGCTGCAACCCTCACCCCTACAACGAAGGATACGTGTACTAA

Translation (459 aa):
MDGFYDQQVPYVVTNSQRGRNCTEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAEVAFHGLPLKI
KKEPHSPCSELGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNTAHT
PKPDRAFPAHLPPSQSIPDSTYPMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFK
QEYHDPVYEHTTMVGGAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGP
RQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEP
EEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDM
ERHINEEDTVPLSHFDESMTYMPEGGCCNPHPYNEGYVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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