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Report for CCDS83802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83802.1 Public Mus musculus 11 Zfp354a 23 108 98 CCDS HistoryNCBI Gene:21408Re-query CCDS DB by CCDS ID:83802.1Re-query CCDS DB by GeneID:21408See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109122.7 ENSMUSP00000104750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109122.7Link to Ensembl Protein Viewer:ENSMUSP00000104750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109122Re-query CCDS DB by Protein ID:ENSMUSP00000104750
Original member NCBI NM_001326566.1 NP_001313495.1 Updated not alive Link to Nucleotide Sequence:NM_001326566.1Link to Protein Sequence:NP_001313495.1Re-query CCDS DB by Nucleotide ID:NM_001326566Re-query CCDS DB by Protein ID:NP_001313495
Current member NCBI NM_001326566.2 NP_001313495.1 Accepted alive Link to Nucleotide Sequence:NM_001326566.2Link to Protein Sequence:NP_001313495.1Re-query CCDS DB by Nucleotide ID:NM_001326566Re-query CCDS DB by Protein ID:NP_001313495Link to BLAST:NP_001313495.1

Chromosomal Locations for CCDS 83802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51060012 51060041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51060860 51060986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51061403 51061498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51069223 51070685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGCTGCTTCTGACAGGTGCCGAGCAACAGGTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCC
GGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAG
CAACCTGGCCTCGCTGGGATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGAT
CCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCGGACTGAAGTGCAGTCAGAGAACCACTA
AGTCAACTCAAACACAAGACTCTTCATTTCGGGAACTGATTATGAGAAAATCTAAAAGAAAAGAACCTTG
GAACATGAAGTCAGAAAATCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTGGGATGTGAATGCCTCG
ACTATAGAAAGAAGCTATAAAAGCAATGAACTGAGCCCAAAGTCACATAGAGAAAAAAGGTCATCAGAAT
GTGAAAAGCAAATATCATATTTATCTAATCCATTAGGAATCACCCCAGATAAACGCTATAAATGTAGTAT
GTGTGAGAAAACTTTCATTAACACCTCATCTCTTCGTAAACATGAGAAAAATCATAGTGGAGAGAAATTA
TTTAAATGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCATA
CTGGAGAGAAGCCTTATGTATGTAAAGAATGTGGCAAAGCCTTCACTCTCAGTACATCCCTGTATAAACA
TCTAAGAACCCACACTGTAGAGAAATCCTACAGATGTAAGGAATGTGGTAAATCCTTTGGCCGAAGGTCA
GGTCTTTTTATACACCAGAAGGTCCATGCTGGAGAAAACCCTTATAAATATAACCCAGGGAGGAAGGCAT
CTACTTCCCTTTCAGGATGCCAGAGAATTCATTCCAGAAAGAAGACCTACTTGTGCAACGAATGTGGCAA
CACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGAGGATCCACACCGGAGAGAAACCTTTCAAGTGC
AGTGAGTGTGGTAGGGCCTTCAGTCAGAGTGCATCACTTATTCAGCATGAAAGAATCCACACTGGAGAAA
AGCCCTACAGATGCAGTGAGTGTGGGAAAGGCTTCACTTCCATCTCAAGACTCAATAGACACCGAATAAT
TCATACGGGAGAGAAGTTTTATAATTGCAATGAGTGTGGCAAAGCCTTAAGTTCCCATTCAACTCTTATT
ATTCACGAAAGAATTCACACTGGAGAGAAACCGTGTAAATGTAAAGTTTGTGGGAAAGCCTTCCGACAAA
GTTCAGCTCTGATCCAACATCAGAGAATGCACACTGGAGAAAGACCCTATAAATGCAATGAGTGCGGCAA
GACCTTCAGGTGTAACTCATCCCTAAGTAACCATCAGCGAACCCACACTGGAGAGAAGCCGTACCGATGT
CAGGAATGCGGGATGTCATTTGGTCAAAGTTCAGCTCTTATTCAGCACCGAAGGATTCACACTGGTGAGA
AACCCTTTAAATGTAACACGTGCGGGAAAACCTTTAGGCAGAGCTCCTCACGGATAGCACATCAGCGAAT
TCATACTGGAGAGAAACCCTATGAATGTAACACATGTGGGAAACTTTTCAACCATAGGTCATCCCTCACC
AACCATTATAAAATTCACGTGGATGAGGACCCTTAA

Translation (571 aa):
MLLLTGAEQQVSLTFEDVAVLFTRDEWKKLVPSQRSLYREVMLENYSNLASLGFPFTKPKVISLLQQGED
PWKVEEEGPGGFSLGLKCSQRTTKSTQTQDSSFRELIMRKSKRKEPWNMKSENLSIHEGKLEEKWDVNAS
TIERSYKSNELSPKSHREKRSSECEKQISYLSNPLGITPDKRYKCSMCEKTFINTSSLRKHEKNHSGEKL
FKCKECSKAFSQSSALIQHQITHTGEKPYVCKECGKAFTLSTSLYKHLRTHTVEKSYRCKECGKSFGRRS
GLFIHQKVHAGENPYKYNPGRKASTSLSGCQRIHSRKKTYLCNECGNTFKSSSSLRYHQRIHTGEKPFKC
SECGRAFSQSASLIQHERIHTGEKPYRCSECGKGFTSISRLNRHRIIHTGEKFYNCNECGKALSSHSTLI
IHERIHTGEKPCKCKVCGKAFRQSSALIQHQRMHTGERPYKCNECGKTFRCNSSLSNHQRTHTGEKPYRC
QECGMSFGQSSALIQHRRIHTGEKPFKCNTCGKTFRQSSSRIAHQRIHTGEKPYECNTCGKLFNHRSSLT
NHYKIHVDEDP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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