NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83653.1 Public Mus musculus 1 Ephx1 23 108 98 CCDS HistoryNCBI Gene:13849Re-query CCDS DB by CCDS ID:83653.1Re-query CCDS DB by GeneID:13849See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111068.7 ENSMUSP00000106697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111068.7Link to Ensembl Protein Viewer:ENSMUSP00000106697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111068Re-query CCDS DB by Protein ID:ENSMUSP00000106697
Original member Current member NCBI NM_001312918.1 NP_001299847.1 Accepted alive Link to Nucleotide Sequence:NM_001312918.1Link to Protein Sequence:NP_001299847.1Re-query CCDS DB by Nucleotide ID:NM_001312918Re-query CCDS DB by Protein ID:NP_001299847Link to BLAST:NP_001299847.1

Chromosomal Locations for CCDS 83653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180989779 180989980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180990393 180990518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180991933 180992041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180993879 180994045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180994628 180994757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180995949 180996176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180999723 180999903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181001799 181001981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGTGGCTGGAACTCATCCTGGCTTCTGTGCTGGGCTTTGTCATCTACTGGTTTGTCTCCCGGGACAAGG
AGGAGACCTTACCACTTGAAGATGGGTGGTGGGGCCCAGGGTCAAAGCCATCAGCCAAAGAAGATGAGAG
CATCCGGCCCTTCAAGGTGGAAACATCAGATGAGGAGATCAAGGACTTGCACCAGAGGATAGATAGGTTC
CGGGCATCCCCACCTTTGGAGGGCAGTCGCTTCCACTATGGCTTCAACTCCAGCTACCTGAAGAAAGTGG
TGTCCTTCTGGAGGAATGAGTTTGACTGGAGGAAGCAGGTGGAGATCCTCAACCAATACCCACACTTTAA
GACCAAGATTGAAGGGCTGGACATCCACTTCATCCACGTGAAACCTCCCCAGCTGCCCTCAGGCCGCACT
CCAAAGCCCTTGCTGATGGTGCACGGCTGGCCTGGCTCCTTCTATGAGTTCTACAAGATTATCCCACTGC
TGACAGACCCCAAGACCCACGGCCTGAGTGATGAGCACGTGTTTGAAGTCATCTGTCCCTCAATTCCTGG
CTATGGCTTCTCAGAGGCATCCAGCAAGAAAGGTTTAAATTCGGTGGCCACTGCGAGGATCTTCTACAAG
CTGATGTCACGGCTGGGCTTCCAGAAGTTCTACATTCAAGGCGGCGACTGGGGGTCTCTCATCTGCACCA
ACATAGCCCAGATGGTGCCCAAAAACATTTATTCCCTGACCCCTCTCCTGGGCCAACGTTTTGGGAGATT
TCTTGGCTACACAGAGAAGGATCTGGAGCTCTTGTACCCATTCAAGGAAAAGGTTTTCTACAACATCATG
AGGGAGAGTGGCTACTTACACATCCAGGCCACCAAGCCGGACACTGTGGGCTGTGCTCTGAATGACTCTC
CTGTGGGCCTGGCTGCCTACATCTTAGAGAAGTTCTCCACCTGGACCAAGTCAGAATACCGTGAACTGGA
GGATGGAGGCCTGGAGAGGAAGTTCTCCCTGGAAGATCTGCTGACTAACATCATGATCTACTGGACGACA
GGAACCATTGTCTCCTCCCAGCGCTTCTACAAGGAAAACTTGGGCCAGGGTGTCATGGTCCATAGACATG
AGGGGATGAAGGTCTTTGTGCCCACTGGCTATTCAGCCTTCCCTTCTGAGATCCTGCATGCCCCAGAAAA
GTGGGTGAAGGTCAAGTACCCCAAACTCATCTCCTATTCCTACATGGAACGTGGGGGCCACTTTGCTGCC
TTCGAAGAGCCCAAGCTTCTGGCCCAGGACATCCGCAAGTTCGTGTCCCTGGCTGAGCTGCAGTGA

Translation (441 aa):
MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKEDESIRPFKVETSDEEIKDLHQRIDRF
RASPPLEGSRFHYGFNSSYLKKVVSFWRNEFDWRKQVEILNQYPHFKTKIEGLDIHFIHVKPPQLPSGRT
PKPLLMVHGWPGSFYEFYKIIPLLTDPKTHGLSDEHVFEVICPSIPGYGFSEASSKKGLNSVATARIFYK
LMSRLGFQKFYIQGGDWGSLICTNIAQMVPKNIYSLTPLLGQRFGRFLGYTEKDLELLYPFKEKVFYNIM
RESGYLHIQATKPDTVGCALNDSPVGLAAYILEKFSTWTKSEYRELEDGGLERKFSLEDLLTNIMIYWTT
GTIVSSQRFYKENLGQGVMVHRHEGMKVFVPTGYSAFPSEILHAPEKWVKVKYPKLISYSYMERGGHFAA
FEEPKLLAQDIRKFVSLAELQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH