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Report for CCDS83630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83630.1 Public Mus musculus 1 Ccdc190 23 108 98 CCDS HistoryNCBI Gene:78465Re-query CCDS DB by CCDS ID:83630.1Re-query CCDS DB by GeneID:78465See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175731.2 ENSMUSP00000135819.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175731.2Link to Ensembl Protein Viewer:ENSMUSP00000135819.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175731Re-query CCDS DB by Protein ID:ENSMUSP00000135819
Original member Current member NCBI NM_001347138.1 NP_001334067.1 Accepted alive Link to Nucleotide Sequence:NM_001347138.1Link to Protein Sequence:NP_001334067.1Re-query CCDS DB by Nucleotide ID:NM_001347138Re-query CCDS DB by Protein ID:NP_001334067Link to BLAST:NP_001334067.1

Chromosomal Locations for CCDS 83630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169929974 169930160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169932992 169933115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169933642 169934200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGACAGAAGCATGGTGAAGGGACCTCTGTATAAGCAGTTTGACTTGGAGAGAAAGAGTGCCAGGCAAG
CAGAAGCCAGACTCAGCCTTAGACTGCAAAGGCTGGAGATCATCTGCCTCTATCACGTGAAATCGCTAGC
CAGGGAGCAGAGACAGCTTCAGAAAGAACTGCAGCGCCTGCAGCAAGCAGATATCATCAAGAAAAGGTTC
TCTTCTTATGTGGGGCATGAAATTCAAAAGAGATCGAAAGATGTTGTCACATTCTTGCCACCAACAGGAC
AGAGGCACGCAGTCCCGGAGCCTAAAATTAGAACACTGAAAAACAGTGTTACCCAAGAAGTTAAAACTAA
GATTCCGGTGCCCTCTTTACATGACCCTGTCCTCAAAGACACCCTGAGAAGCCAAGAGCACCTTCTATCT
CACGGTGAGAGAACCAGCTGCTTCAAAGAAGGAAGCCCACAAGGCCAGGAGGGAGAGCCCACGAATCCAC
TGAAGGGCGTGGACCCCAGCAAGGATGTCTCTGTCCCATGTCATGACCAAGAGCTGTCCACCAACAAGAC
AGAAGACAGTGGCGTGTCCAGCCAAGATGGTGAGAGAGGGTCAGCACCTGCTAATGAGACCAGATCTGAA
AATGCCAGTCAAAAGCCACGTGGAGATGCTGATGTACAAAATTCCCCCAGCTCCGTGGACTATGCAGGAA
GCTTCAAAGATGAACGCACAAAGCCATCCTTCCTAGAGCTGTTCGAAAAGGCCAAGAATGCTCACTATGT
CCGCCACAGGGTGCCCCCCGAGTCTGAGAGATTACTTAGCATCGGAGAGATATTTGGACACAAACACTAC
TCACTCCCCAGAACAGGGGAAACACTGTGA

Translation (289 aa):
MDRSMVKGPLYKQFDLERKSARQAEARLSLRLQRLEIICLYHVKSLAREQRQLQKELQRLQQADIIKKRF
SSYVGHEIQKRSKDVVTFLPPTGQRHAVPEPKIRTLKNSVTQEVKTKIPVPSLHDPVLKDTLRSQEHLLS
HGERTSCFKEGSPQGQEGEPTNPLKGVDPSKDVSVPCHDQELSTNKTEDSGVSSQDGERGSAPANETRSE
NASQKPRGDADVQNSPSSVDYAGSFKDERTKPSFLELFEKAKNAHYVRHRVPPESERLLSIGEIFGHKHY
SLPRTGETL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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