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Report for CCDS83295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83295.1 Public Homo sapiens 8 SDR16C5 24 110 108 CCDS HistoryNCBI Gene:195814Re-query CCDS DB by CCDS ID:83295.1Re-query CCDS DB by GeneID:195814See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396721.6 ENSP00000379947.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396721.6Link to Ensembl Protein Viewer:ENSP00000379947.2Re-query CCDS DB by Nucleotide ID:ENST00000396721Re-query CCDS DB by Protein ID:ENSP00000379947
Original member Current member NCBI NM_001318050.2 NP_001304979.1 Accepted alive Link to Nucleotide Sequence:NM_001318050.2Link to Protein Sequence:NP_001304979.1Re-query CCDS DB by Nucleotide ID:NM_001318050Re-query CCDS DB by Protein ID:NP_001304979Link to BLAST:NP_001304979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304979.1 265 Q8N3Y7-2 265 100% 0 0

Chromosomal Locations for CCDS 83295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56301480 56301573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56305597 56305722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56306676 56306820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56308928 56309027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56316015 56316347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGTCTTTCAACCTGCAATCATCAAAGAAACTGTTCATTTTCTTAGGAAAATCACTGTTTAGTCTTCTGG
AGGCTATGATTTTTGCCTTACTCCCAAAGCCACGGAAGAACGTTGCTGGTGAAATAGTCCTCATCACAGG
TGCTGGAAGTGGACTCGGAAGGCTCTTAGCCTTGCAGTTTGCCCGGCTGGGATCTGTTCTTGTTCTCTGG
GATATCAATAAGGAGGGGAATGAGGAAACATGTAAGATGGCTCGGGAAGCTGGAGCCACAAGAGTGCACG
CCTATACCTGCGATTGCAGCCAAAAGGAAGGAGTGTATAGAGTAGCCGACCAGACTTATAAAGCCTTTCT
ACCTGCTATGATTGCTAATGACCATGGACATTTGGTTTGCATTTCAAGTTCAGCTGGATTAAGTGGAGTA
AATGGGCTGGCAGATTACTGTGCAAGTAAATTTGCAGCCTTTGGGTTTGCTGAATCTGTATTTGTAGAAA
CATTTGTCCAAAAACAAAAGGGGATCAAAACCACGATTGTGTGCCCCTTTTTTATAAAAACTGGAATGTT
TGAAGGTTGTACTACAGGCTGTCCTTCTCTGTTGCCAATTCTGGAACCAAAATATGCAGTTGAAAAAATA
GTAGAAGCTATTCTACAAGAAAAAATGTACTTGTATATGCCAAAGTTGTTATACTTCATGATGTTTCTTA
AAAGCTTTTTGCCCCTCAAGACAGGACTGCTTATAGCTGACTATTTGGGCATCCTTCATGCAATGGATGG
CTTTGTTGACCAAAAGAAGAAGCTCTAA

Translation (265 aa):
MSFNLQSSKKLFIFLGKSLFSLLEAMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLW
DINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQTYKAFLPAMIANDHGHLVCISSSAGLSGV
NGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKI
VEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGILHAMDGFVDQKKKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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