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Report for CCDS83125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83125.1 Public Homo sapiens 6 NCOA7 24 110 108 CCDS HistoryNCBI Gene:135112Re-query CCDS DB by CCDS ID:83125.1Re-query CCDS DB by GeneID:135112See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438495.6 ENSP00000398268.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438495.6Link to Ensembl Protein Viewer:ENSP00000398268.2Re-query CCDS DB by Nucleotide ID:ENST00000438495Re-query CCDS DB by Protein ID:ENSP00000398268
Original member Current member NCBI NM_001199622.2 NP_001186551.1 Accepted alive Link to Nucleotide Sequence:NM_001199622.2Link to Protein Sequence:NP_001186551.1Re-query CCDS DB by Nucleotide ID:NM_001199622Re-query CCDS DB by Protein ID:NP_001186551Link to BLAST:NP_001186551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186551.1 219 Q8NI08-5 219 100% 0 0

Chromosomal Locations for CCDS 83125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125919357 125919431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125920943 125921068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125922682 125922834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125927663 125927758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125928174 125928247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125928636 125928771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGAGAGGCCAAAGATTACCCTTGGACATCCAGATTTTCTATTGTGCCAGACCTGACGAAGAGCCTTTTG
TGAAGATCATCACTGTTGAAGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGGACGA
AGAGGTGCTGCCTGTCCTACGGCCCCACAGCGCGCTCCTGGAGAATATGCACATCGAGCAGCTGGCCCGA
CGCCTTCCTGCAAGGGTGCAAGGGTATCCATGGAGACTGGCCTATAGCACGTTAGAGCACGGGACCAGCT
TAAAGACGCTCTACCGGAAATCGGCATCACTAGACAGTCCTGTCCTATTGGTCATCAAAGATATGGATAA
TCAGATTTTTGGAGCATATGCAACTCATCCTTTCAAGTTCAGTGACCACTATTATGGCACAGGCGAAACT
TTTCTCTACACATTCAGCCCTCATTTTAAGGTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATCAATG
GAGACATAAGTTCTTTAGAACTTGGTGGTGGAGGGGGACGATTTGGTTTATGGCTAGATGCTGATTTATA
CCACGGACGAAGCAACTCTTGCAGCACTTTCAATAATGATATTCTTTCCAAAAAGGAAGACTTCATAGTT
CAGGATCTGGAGGTGTGGGCATTTGATTGA

Translation (219 aa):
MRGQRLPLDIQIFYCARPDEEPFVKIITVEEAKRRKSTCSYYEDEDEEVLPVLRPHSALLENMHIEQLAR
RLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFGAYATHPFKFSDHYYGTGET
FLYTFSPHFKVFKWSGENSYFINGDISSLELGGGGGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIV
QDLEVWAFD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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