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Report for CCDS8287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8287.1 Public Homo sapiens 11 TRIM49 24 110 108 CCDS HistoryNCBI Gene:57093Re-query CCDS DB by CCDS ID:8287.1Re-query CCDS DB by GeneID:57093See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329758.5 ENSP00000327604.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329758.5Link to Ensembl Protein Viewer:ENSP00000327604.1Re-query CCDS DB by Nucleotide ID:ENST00000329758Re-query CCDS DB by Protein ID:ENSP00000327604
Original member Current member NCBI NM_020358.2 NP_065091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020358.2Link to Protein Sequence:NP_065091.1Re-query CCDS DB by Nucleotide ID:NM_020358Re-query CCDS DB by Protein ID:NP_065091Link to BLAST:NP_065091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065091.1 452 P0CI25 452 100% 0 0

Chromosomal Locations for CCDS 8287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 89798130 89798629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89799716 89799813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89800966 89800988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89801702 89801932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89803698 89803793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 89804059 89804469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAATTCTGGAATCTTACAGGTCTTTCAGGGGGAACTCATCTGCCCCCTGTGCATGAACTACTTCATAG
ACCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCTTGTTTCTACCTCAACTGGCAAGACATCCC
ATTTCTTGTCCAGTGCTCTGAATGCACAAAGTCAACCGAGCAGATAAACCTCAAAACCAACATTCATTTG
AAGAAGATGGCTTCTCTTGCCAGAAAAGTCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTG
GCACTCACAGGGAGACAAAGAAGATATTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAG
CTCTCAGGAGCACCGGTATCACAGACACCGTCCCATTGAGTGGGCTGCTGAGGAACACCGGGAGAAGCTT
TTACAGAAAATGCAGTCTTTGTGGGAAAAAGCTTGTGAAAATCACAGAAACCTGAATGTGGAAACCACCA
GAACCAGATGCTGGAAGGATTATGTGAATTTAAGGCTAGAAGCAATTAGAGCTGAGTATCAGAAGATGCC
TGCATTTCATCATGAAGAAGAAAAACATAATTTGGAGATGCTGAAAAAGAAGGGGAAAGAAATTTTTCAT
CGACTTCATTTAAGTAAAGCCAAAATGGCTCATAGGATGGAGATTTTAAGAGGAATGTATGAGGAGCTGA
ACGAAATGTGCCATAAACCAGATGTGGAGCTACTTCAGGCTTTTGGAGACATATTACACAGGAGTGAGTC
CGTGCTGCTGCACATGCCCCAGCCTCTGAATCCAGAGCTCAGTGCAGGGCCCATCACTGGACTGAGGGAC
AGGCTCAACCAATTCCGAGTGCATATTACTCTGCATCATGAAGAAGCCAACAATGATATCTTTCTGTATG
AAATTTTGAGAAGCATGTGTATTGGATGTGACCATCAAGATGTACCCTATTTCACTGCAACACCTAGAAG
TTTTCTTGCATGGGGTGTTCAGACTTTCACCTCGGGCAAATATTACTGGGAGGTCCATGTAGGGGACTCC
TGGAATTGGGCTTTTGGTGTCTGTAATATGTATCGGAAAGAGAAGAATCAGAATGAGAAGATAGATGGAA
AGGCGGGACTCTTTCTTCTTGGGTGTGTTAAGAATGACATTCAATGCAGTCTCTTTACCACCTCCCCACT
TATGCTGCAATATATCCCAAAACCTACCAGCCGAGTAGGATTATTCCTGGATTGTGAGGCTAAGACTGTG
AGCTTTGTTGATGTTAATCAAAGCTCCCTAATATACACCATCCCTAATTGCTCTTTCTCACCTCCTCTCA
GGCCTATCTTTTGCTGTATTCACTTCTGA

Translation (452 aa):
MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTEQINLKTNIHL
KKMASLARKVSLWLFLSSEEQMCGTHRETKKIFCEVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKL
LQKMQSLWEKACENHRNLNVETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFH
RLHLSKAKMAHRMEILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPITGLRD
RLNQFRVHITLHHEEANNDIFLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQTFTSGKYYWEVHVGDS
WNWAFGVCNMYRKEKNQNEKIDGKAGLFLLGCVKNDIQCSLFTTSPLMLQYIPKPTSRVGLFLDCEAKTV
SFVDVNQSSLIYTIPNCSFSPPLRPIFCCIHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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