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Report for CCDS82790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82790.1 Public Homo sapiens 3 IL17RD 24 110 108 CCDS HistoryNCBI Gene:54756Re-query CCDS DB by CCDS ID:82790.1Re-query CCDS DB by GeneID:54756See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320057.9 ENSP00000322250.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320057.9Link to Ensembl Protein Viewer:ENSP00000322250.5Re-query CCDS DB by Nucleotide ID:ENST00000320057Re-query CCDS DB by Protein ID:ENSP00000322250
Original member Current member EBI ENST00000463523.5 ENSP00000417516.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463523.5Link to Ensembl Protein Viewer:ENSP00000417516.1Re-query CCDS DB by Nucleotide ID:ENST00000463523Re-query CCDS DB by Protein ID:ENSP00000417516
Original member Current member NCBI NM_001318864.2 NP_001305793.1 Accepted alive Link to Nucleotide Sequence:NM_001318864.2Link to Protein Sequence:NP_001305793.1Re-query CCDS DB by Nucleotide ID:NM_001318864Re-query CCDS DB by Protein ID:NP_001305793Link to BLAST:NP_001305793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305793.1 595 Q8NFM7-2 595 100% 0 0

Chromosomal Locations for CCDS 82790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57096393 57096505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57097596 57098538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57101179 57101363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57102479 57102589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57103091 57103145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57104342 57104407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57105857 57106008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57106110 57106154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57109537 57109654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGAATCTCAACCTTTCCTGAATATGAAATTTGAAACGGATTATTTCGTAAAGGTTGTCCCTTTTCCTT
CCATTAAAAACGAAAGCAATTACCACCCTTTCTTCTTTAGAACCCGAGCCTGTGACCTGTTGTTACAGCC
GGACAATCTAGCTTGTAAACCCTTCTGGAAGCCTCGGAACCTGAACATCAGCCAGCATGGCTCGGACATG
CAGGTGTCCTTCGACCATGCACCGCACAACTTCGGCTTCCGTTTCTTCTATCTTCACTACAAGCTCAAGC
ACGAAGGACCTTTCAAGCGAAAGACCTGTAAGCAGGAGCAAACTACAGAGACGACCAGCTGCCTCCTTCA
AAATGTTTCTCCAGGGGATTATATAATTGAGCTGGTGGATGACACTAACACAACAAGAAAAGTGATGCAT
TATGCCTTAAAGCCAGTGCACTCCCCGTGGGCCGGGCCCATCAGAGCCGTGGCCATCACAGTGCCACTGG
TAGTCATATCGGCATTCGCGACGCTCTTCACTGTGATGTGCCGCAAGAAGCAACAAGAAAATATATATTC
ACATTTAGATGAAGAGAGCTCTGAGTCTTCCACATACACTGCAGCACTCCCAAGAGAGAGGCTCCGGCCG
CGGCCGAAGGTCTTTCTCTGCTATTCCAGTAAAGATGGCCAGAATCACATGAATGTCGTCCAGTGTTTCG
CCTACTTCCTCCAGGACTTCTGTGGCTGTGAGGTGGCTCTGGACCTGTGGGAAGACTTCAGCCTCTGTAG
AGAAGGGCAGAGAGAATGGGTCATCCAGAAGATCCACGAGTCCCAGTTCATCATTGTGGTTTGTTCCAAA
GGTATGAAGTACTTTGTGGACAAGAAGAACTACAAACACAAAGGAGGTGGCCGAGGCTCGGGGAAAGGAG
AGCTCTTCCTGGTGGCGGTGTCAGCCATTGCCGAAAAGCTCCGCCAGGCCAAGCAGAGTTCGTCCGCGGC
GCTCAGCAAGTTTATCGCCGTCTACTTTGATTATTCCTGCGAGGGAGACGTCCCCGGTATCCTAGACCTG
AGTACCAAGTACAGACTCATGGACAATCTTCCTCAGCTCTGTTCCCACTTGCACTCCCGAGACCACGGCC
TCCAGGAGCCGGGGCAGCACACGCGACAGGGCAGCAGAAGGAACTACTTCCGGAGCAAGTCAGGCCGGTC
CCTATACGTCGCCATTTGCAACATGCACCAGTTTATTGACGAGGAGCCCGACTGGTTCGAAAAGCAGTTC
GTTCCCTTCCATCCTCCTCCACTGCGCTACCGGGAGCCAGTCTTGGAGAAATTTGATTCGGGCTTGGTTT
TAAATGATGTCATGTGCAAACCAGGGCCTGAGAGTGACTTCTGCCTAAAGGTAGAGGCGGCTGTTCTTGG
GGCAACCGGACCAGCCGACTCCCAGCACGAGAGTCAGCATGGGGGCCTGGACCAAGACGGGGAGGCCCGG
CCTGCCCTTGACGGTAGCGCCGCCCTGCAACCCCTGCTGCACACGGTGAAAGCCGGCAGCCCCTCGGACA
TGCCGCGGGACTCAGGCATCTATGACTCGTCTGTGCCCTCATCCGAGCTGTCTCTGCCACTGATGGAAGG
ACTCTCGACGGACCAGACAGAAACGTCTTCCCTGACGGAGAGCGTGTCCTCCTCTTCAGGCCTGGGTGAG
GAGGAACCTCCTGCCCTTCCTTCCAAGCTCCTCTCTTCTGGGTCATGCAAAGCAGATCTTGGTTGCCGCA
GCTACACTGATGAACTCCACGCGGTCGCCCCTTTGTAA

Translation (595 aa):
MESQPFLNMKFETDYFVKVVPFPSIKNESNYHPFFFRTRACDLLLQPDNLACKPFWKPRNLNISQHGSDM
QVSFDHAPHNFGFRFFYLHYKLKHEGPFKRKTCKQEQTTETTSCLLQNVSPGDYIIELVDDTNTTRKVMH
YALKPVHSPWAGPIRAVAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTAALPRERLRP
RPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIVVCSK
GMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYFDYSCEGDVPGILDL
STKYRLMDNLPQLCSHLHSRDHGLQEPGQHTRQGSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEKQF
VPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEAR
PALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGE
EEPPALPSKLLSSGSCKADLGCRSYTDELHAVAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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