NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82780.1 Public Homo sapiens 3 SEMA3F 24 110 108 CCDS HistoryNCBI Gene:6405Re-query CCDS DB by CCDS ID:82780.1Re-query CCDS DB by GeneID:6405See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413852.5 ENSP00000388931.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413852.5Link to Ensembl Protein Viewer:ENSP00000388931.1Re-query CCDS DB by Nucleotide ID:ENST00000413852Re-query CCDS DB by Protein ID:ENSP00000388931
Original member Current member NCBI NM_001318798.2 NP_001305727.1 Accepted alive Link to Nucleotide Sequence:NM_001318798.2Link to Protein Sequence:NP_001305727.1Re-query CCDS DB by Nucleotide ID:NM_001318798Re-query CCDS DB by Protein ID:NP_001305727Link to BLAST:NP_001305727.1

Chromosomal Locations for CCDS 82780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50173885 50173953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174052 50174114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174231 50174350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50176768 50176861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182284 50182403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182644 50182783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182904 50183018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183186 50183255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183420 50183564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50184592 50184814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185443 50185531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185666 50185707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185889 50186046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186281 50186348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186613 50186746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50187705 50188115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCATTA
TACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAACGGCGAGTG
TGGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTAC
AACCCCATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAGGATTACATCTTCTACCTGGAGCCTGAGC
GACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCATCAATGA
GGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCATCTTCCGCACACTTGGAAAG
CAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGC
TCATTCCTGACAGTGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGTGAGCGGTCGGCAGAGGC
GCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATGACGGTGGTCACTGTTGC
CTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTG
AGACTCACTTTGATGAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTA
CGCTGTCTTTACCTCCTCTGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATT
CGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGA
AGATGCCCTACCCACGGCCGGGCACGTGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGA
TTATCCTGATGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAG
CGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCTACCGCCTTACCACTATTGCCGTGGACCAGGTGGATG
CAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATTGTGCT
GCCCAAGGATGACCAGGAGTTGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCTTCAAGGATCCAGCACCC
GTCAAGACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGGCGTCAGCCGTGGGTGTCACACACC
TGAGCCTGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTG
TGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGAGCCGCCGGCAGGACGTC
CGGCACGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATGCCGTGGAGTCTG
TGCAGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAAGCCACTGTTAA
GTGGCTGTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACA
GAGCAGGGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGA
ACAACTTTAAGCACGTCGTCACACGAGTGCAGCTGCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCT
CTTCCCACCACTGTCCATGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCAACGCCTCCTTACCAGGAG
TTAGCCCAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGTTACTGGCGCCATG
TGCCCCCCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGAGCCCCAGGACCAGAAAAAGCCCCG
GAACCGCCGGCACCACCCTCCGGACACATGA

Translation (686 aa):
MYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAY
NPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGK
QTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCC
LVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADI
RMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQ
RRPLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQELEELMLEEVEVFKDPAP
VKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDV
RHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRT
EQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQE
LAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH