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Report for CCDS82680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82680.1 Public Homo sapiens 21 GATD3 24 110 108 CCDS HistoryNCBI Gene:8209Re-query CCDS DB by CCDS ID:82680.1Re-query CCDS DB by GeneID:8209See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427803.6 ENSP00000396655.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427803.6Link to Ensembl Protein Viewer:ENSP00000396655.2Re-query CCDS DB by Nucleotide ID:ENST00000427803Re-query CCDS DB by Protein ID:ENSP00000396655
Original member Current member NCBI NM_001320384.2 NP_001307313.1 Accepted alive Link to Nucleotide Sequence:NM_001320384.2Link to Protein Sequence:NP_001307313.1Re-query CCDS DB by Nucleotide ID:NM_001320384Re-query CCDS DB by Protein ID:NP_001307313Link to BLAST:NP_001307313.1

Chromosomal Locations for CCDS 82680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44133698 44133838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44134102 44134154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44136060 44136173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44137177 44137296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44140250 44140342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44140942 44141074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCGGCTGTGAGGGTCCTGGTGGCCTCGAGGCTCGCTGCGGCATCTGCATTCACGTCCCTGTCCCCCG
GCGGTCGGACGCCTTCCCAGCGCGCAGCCCTTCACCTCTCCGTGCCGCGCCCCGCGGCCAGGGTCGCGCT
GGTGCTGTCTGGATGCGGAGTCTACGATGGGACCGAGATCCACGAGGCCTCGGCGATCCTGGTGCACCTG
AGCCGTGGAGGGGCTGAAGTCCAGATCTTTGCTCCTGACGTCCCTCAGATGCACGTGATTGACCACACCA
AGGGGCAGCCGTCCGAAGGCGAGAGCAGGAATGTTTTGACCGAGTCTGCGAGGATCGCCCGTGGCAAAAT
CACAGACCTGGCCAACCTCAGTGCAGCCAACCATGATGCTGCCATCTTTCCAGGAGGCTTTGGAGCGGCT
AAAAACCTGAGCACGTTTGCCGTGGACGGGAAAGATTGCAAGGTGAATAAAGAAGTGGAGCGTGTCCTGA
AGGAGTTCCACCAGGCCGGGAAGCCCATCGGGTGTGATGCTTCCACGAGCCTCCCGGCACCTGCTCCTTG
GTGGTCCTGGAACGCGGCGCTGTGCTGTCCAGGTCTCAGCTGCGTCTGGTGCTGGCAGGGCGAGAGCCGC
ACTTGCGTGGGTGAACATCAGTGA

Translation (217 aa):
MAAVRVLVASRLAAASAFTSLSPGGRTPSQRAALHLSVPRPAARVALVLSGCGVYDGTEIHEASAILVHL
SRGGAEVQIFAPDVPQMHVIDHTKGQPSEGESRNVLTESARIARGKITDLANLSAANHDAAIFPGGFGAA
KNLSTFAVDGKDCKVNKEVERVLKEFHQAGKPIGCDASTSLPAPAPWWSWNAALCCPGLSCVWCWQGESR
TCVGEHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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