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Report for CCDS82623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82623.1 Public Homo sapiens 20 ELMO2 24 110 108 CCDS HistoryNCBI Gene:63916Re-query CCDS DB by CCDS ID:82623.1Re-query CCDS DB by GeneID:63916See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372176.5 ENSP00000361249.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372176.5Link to Ensembl Protein Viewer:ENSP00000361249.1Re-query CCDS DB by Nucleotide ID:ENST00000372176Re-query CCDS DB by Protein ID:ENSP00000361249
Original member Current member NCBI NM_001318253.2 NP_001305182.1 Accepted alive Link to Nucleotide Sequence:NM_001318253.2Link to Protein Sequence:NP_001305182.1Re-query CCDS DB by Nucleotide ID:NM_001318253Re-query CCDS DB by Protein ID:NP_001305182Link to BLAST:NP_001305182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305182.1 632 Q96JJ3-3 632 100% 0 0

Chromosomal Locations for CCDS 82623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46367360 46367560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46368891 46368968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46370443 46370525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371352 46371459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371579 46371691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371806 46371969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46373399 46373535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46374332 46374440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46374536 46374640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46375236 46375370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46375668 46375790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46380253 46380303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46383416 46383494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46386124 46386275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46387338 46387437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46389039 46389199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGAGAGGACCCAGTCATCCAACATGGAGACCCGGCTGGATGCCATGAAGGAGCTGGCCAAGCTCTCTG
CCGACGTGACTTTCGCTACTGAGTTCATCAACATGGATGGCATCATTGTGCTGACAAGGCTCGTGGAAAG
TGGAACCAAGCTCTTGTCCCACTACAGTGAGATGCTGGCATTCACCCTGACTGCCTTCCTAGAGCTCATG
GACCATGGCATTGTCTCCTGGGACATGGTTTCAATCACCTTTATTAAGCAGATTGCAGGGTATGTGAGCC
AGCCCATGGTGGACGTGTCAATCCTTCAGAGGTCCCTGGCCATCCTGGAGAGCATGGTCTTGAACAGCCA
GAGTCTGTACCAGAAGATAGCCGAGGAAATCACCGTGGGACAGCTCATCTCACACCTCCAGGTCTCCAAC
CAGGAGATTCAGACCTACGCCATTGCACTGATTAATGCACTTTTTCTGAAGGCTCCTGAGGACAAACGAC
AGGATATGGCAAATGCATTTGCACAGAAGCATCTCCGGTCTATAATCCTGAATCATGTGATCCGAGGGAA
CCGCCCCATCAAAACTGAGATGGCCCATCAGCTATATGTCCTTCAAGTCCTAACCTTTAACCTTCTGGAA
GAAAGGATGATGACCAAGATGGACCCCAATGACCAGGCTCAAAGGGACATCATATTTGAACTGAGGAGGA
TTGCATTTGACGCAGAGTCTGATCCTAGCAATGCCCCTGGGAGTGGGACCGAAAAACGCAAAGCCATGTA
CACAAAGGACTACAAAATGCTGGGATTTACCAACCACATCAATCCAGCCATGGACTTTACCCAGACTCCT
CCTGGAATGCTGGCCTTGGACAACATGCTGTACTTGGCTAAAGTCCACCAGGACACCTACATCCGGATTG
TCTTGGAGAACAGTAGCCGGGAAGACAAACATGAATGCCCCTTTGGCCGCAGTGCCATTGAGCTCACCAA
AATGCTCTGTGAAATCCTGCAGGTTGGGGAACTACCAAATGAAGGACGCAATGACTACCACCCGATGTTC
TTTACCCATGACCGAGCCTTTGAAGAGCTCTTTGGAATCTGCATCCAGCTGTTGAACAAGACCTGGAAGG
AGATGAGGGCAACAGCAGAGGACTTCAACAAGGTTATGCAAGTCGTCCGAGAGCAAATCACTCGAGCTTT
GCCCTCCAAACCCAACTCTTTGGATCAGTTCAAGAGCAAATTGCGTAGCCTGAGTTACTCTGAGATTCTA
CGACTGCGCCAGTCTGAGAGGATGAGTCAGGATGACTTCCAGTCCCCGCCAATTGTGGAGCTGAGGGAGA
AGATCCAGCCCGAGATCCTTGAGCTGATCAAGCAGCAGCGCCTGAACCGGCTCTGTGAGGGCAGCAGCTT
CCGAAAGATTGGGAACCGCCGAAGGCAAGAACGGTTCTGGTACTGCCGGTTGGCACTGAACCACAAGGTC
CTTCACTATGGTGACTTGGATGACAACCCACAAGGGGAGGTGACATTTGAATCCCTGCAGGAGAAAATTC
CTGTTGCAGACATTAAGGCCATTGTCACTGGGAAAGATTGTCCCCACATGAAAGAGAAAAGTGCTCTGAA
ACAGAACAAGGAGGTGTTGGAATTGGCCTTCTCCATCCTGTATGACCCTGATGAGACCTTAAACTTCATC
GCACCTAATAAATATGAGTACTGCATCTGGATTGATGGCCTCAGTGCCCTTCTGGGGAAGGACATGTCCA
GTGAGCTGACCAAGAGTGACCTGGACACCCTGCTGAGCATGGAGATGAAGCTGCGGCTCCTGGACCTGGA
GAACATCCAGATTCCCGAAGCCCCACCCCCCATCCCCAAGGAGCCCAGCAGCTATGACTTTGTCTATCAC
TATGGCTGA

Translation (632 aa):
MERTQSSNMETRLDAMKELAKLSADVTFATEFINMDGIIVLTRLVESGTKLLSHYSEMLAFTLTAFLELM
DHGIVSWDMVSITFIKQIAGYVSQPMVDVSILQRSLAILESMVLNSQSLYQKIAEEITVGQLISHLQVSN
QEIQTYAIALINALFLKAPEDKRQDMANAFAQKHLRSIILNHVIRGNRPIKTEMAHQLYVLQVLTFNLLE
ERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYKMLGFTNHINPAMDFTQTP
PGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMF
FTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEIL
RLRQSERMSQDDFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRRRQERFWYCRLALNHKV
LHYGDLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDETLNFI
APNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPIPKEPSSYDFVYH
YG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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