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Report for CCDS8252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8252.1 Public Homo sapiens 11 CLNS1A 24 110 108 CCDS HistoryNCBI Gene:1207Re-query CCDS DB by CCDS ID:8252.1Re-query CCDS DB by GeneID:1207See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525428.6 ENSP00000433919.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000525428.6Link to Ensembl Protein Viewer:ENSP00000433919.1Re-query CCDS DB by Nucleotide ID:ENST00000525428Re-query CCDS DB by Protein ID:ENSP00000433919
Original member Current member EBI ENST00000528364.1 ENSP00000434311.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528364.1Link to Ensembl Protein Viewer:ENSP00000434311.1Re-query CCDS DB by Nucleotide ID:ENST00000528364Re-query CCDS DB by Protein ID:ENSP00000434311
Original member Current member NCBI NM_001293.3 NP_001284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001293.3Link to Protein Sequence:NP_001284.1Re-query CCDS DB by Nucleotide ID:NM_001293Re-query CCDS DB by Protein ID:NP_001284Link to BLAST:NP_001284.1
Original member Current member NCBI NM_001311199.2 NP_001298128.1 Accepted alive Link to Nucleotide Sequence:NM_001311199.2Link to Protein Sequence:NP_001298128.1Re-query CCDS DB by Nucleotide ID:NM_001311199Re-query CCDS DB by Protein ID:NP_001298128Link to BLAST:NP_001298128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284.1 237 P54105 237 100% 0 0
NP_001298128.1 237 P54105 237 100% 0 0

Chromosomal Locations for CCDS 8252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77619628 77619695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77622500 77622673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77624963 77625070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77625717 77625818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77629763 77629899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77637590 77637714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGAGGGGCTCCTGCGGCAGCAGCCAGACACTG
AGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAGCCGCCTGTCTTGGTT
AGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGA
AGTGACTGTCTAGGAGAGCATTTGTATGTTATGGTGAATGCCAAATTTGAAGAAGAATCAAAAGAACCTG
TTGCTGATGAAGAAGAGGAAGACAGTGATGATGATGTTGAACCTATTACTGAATTTAGATTTGTGCCTAG
TGATAAATCAGCGTTGGAGGCAATGTTCACTGCAATGTGCGAATGCCAGGCCTTGCATCCAGATCCTGAG
GATGAGGATTCAGATGACTACGATGGAGAAGAATATGATGTGGAAGCACATGAACAAGGACAGGGGGACA
TCCCTACATTTTACACCTATGAAGAAGGATTATCCCATCTAACAGCAGAAGGCCAAGCCACACTGGAGAG
ATTAGAAGGAATGCTTTCTCAGTCTGTGAGCAGCCAGTATAATATGGCTGGGGTCAGGACAGAAGATTCA
ATAAGAGATTATGAAGATGGGATGGAGGTGGATACCACACCAACAGTTGCTGGACAGTTTGAGGATGCAG
ATGTTGATCACTGA

Translation (237 aa):
MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHALSRDR
SDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMFTAMCECQALHPDPE
DEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDS
IRDYEDGMEVDTTPTVAGQFEDADVDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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