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Report for CCDS82413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82413.1 Public Homo sapiens 19 ZNF544 24 110 108 CCDS HistoryNCBI Gene:27300Re-query CCDS DB by CCDS ID:82413.1Re-query CCDS DB by GeneID:27300See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600220.5 ENSP00000471684.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600220.5Link to Ensembl Protein Viewer:ENSP00000471684.1Re-query CCDS DB by Nucleotide ID:ENST00000600220Re-query CCDS DB by Protein ID:ENSP00000471684
Original member Current member EBI ENST00000600044.5 ENSP00000472721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600044.5Link to Ensembl Protein Viewer:ENSP00000472721.1Re-query CCDS DB by Nucleotide ID:ENST00000600044Re-query CCDS DB by Protein ID:ENSP00000472721
Original member Current member NCBI NM_001320770.2 NP_001307699.1 Accepted alive Link to Nucleotide Sequence:NM_001320770.2Link to Protein Sequence:NP_001307699.1Re-query CCDS DB by Nucleotide ID:NM_001320770Re-query CCDS DB by Protein ID:NP_001307699Link to BLAST:NP_001307699.1
Original member Current member NCBI NM_001320771.2 NP_001307700.1 Accepted alive Link to Nucleotide Sequence:NM_001320771.2Link to Protein Sequence:NP_001307700.1Re-query CCDS DB by Nucleotide ID:NM_001320771Re-query CCDS DB by Protein ID:NP_001307700Link to BLAST:NP_001307700.1
Original member Current member NCBI NM_001320773.2 NP_001307702.1 Accepted alive Link to Nucleotide Sequence:NM_001320773.2Link to Protein Sequence:NP_001307702.1Re-query CCDS DB by Nucleotide ID:NM_001320773Re-query CCDS DB by Protein ID:NP_001307702Link to BLAST:NP_001307702.1

Chromosomal Locations for CCDS 82413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58244024 58244056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246301 58246427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58260851 58262754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGAAGCACGTTCTATGCTGGTTCCACCCCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCA
CACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTG
GGAGCATATTGTCTCCCTGGACTGGAAAGCTACCCTTGAGGAGAATAGGTTGAATTCTGAAAAAGATCGA
GCTAGGGAAGAACTATCCCACCACGTGGAAGTGTACAGGAGTGGACCGGAGGAGCCACCCTCTTTGGTAT
TAGGAAAAGTGCAAGATCAGAGCAACCAGTTAAGGGAACACCAGGAGAACTCCTTGAGGTTCATGGTACT
CACCTCAGAGAGACTGTTTGCTCAAAGGGAACATTGTGAGCTTGAACTTGGGGGAGGTTATTCTCTACCT
TCTACTTTAAGCCTTCTACCTACAACATTACCTACAAGTACAGGTTTCCCTAAGCCCAACTCACAAGTTA
AAGAGTTGAAACAAAATTCAGCTTTCATTAATCATGAGAAAAATGGAGCAGATGGGAAGCACTGTGAGAG
TCATCAGTGTGCTAGAGCTTTCTGTCAGAGTATTTACTTGAGTAAACTTGGAAACGTTGAAACAGGAAAG
AAAAACCCTTATGAATATATTGTCAGTGGTGACTCTCTCAACTATGGTTCCTCCCTTTGTTTTCATGGTA
GAACTTTTTCAGTGAAGAAAAGTGATGACTGTAAGGATTATGGAAACCTCTTCAGTCACAGTGTGTCTCT
GAATGAACAGAAGCCAGTGCATTTTGGGAAAAGTCAGTATGAGTGTGATGAGTGCAGGGAAACCTGTTCT
GAGAGTCTGTGCCTTGTACAAACAGAAAGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACGCT
GTGCTGCCTTCCCCATGGCCTCATCTTTTTCTGACTGTAACATCATTCAGACTACAGAGAAGCCATCTGT
GTGTAATCAGTGTGGAAAATCTTTCAGCTGTTGTAAGCTCATACACCAGAGAACACACACTGGAGAAAAG
CCCTTCGAATGTACTCAGTGTGGGAAATCTTTTAGCCAGAGCTATGACCTTGTCATACATCAGAGGACAC
ACACTGGAGAGAAGCCCTATGAGTGTGACCTGTGTGGGAAATCCTTCACCCAGAGATCCAAACTTATTAC
ACATCAGCGAATTCACACTGGAGAAAAACCGTATCAGTGTATTGAATGCAGAAAATCCTTCAGGTGGAAC
TCTAACCTCATTGTACATCAGAGAATTCATACTGGAGAGAAACCGTATGAGTGCACTCACTGTGGAAAGT
CCTTCAGCCAAAGCTATGAGTTAGTTACACATAAAAGAACGCACACTGGAGAAAAACCCTTCAAATGTAC
TCAGTGTGGGAAATCTTTCAGCCAGAAGTATGACCTTGTTGTACATCAGAGGACACACACTGGAGAGAAG
CCCTATGAGTGCAACCTGTGTGGGAAATCCTTCTCCCAGAGTTCCAAACTTATTACGCATCAGCGAATTC
ACACTGGAGAAAAACCGTATCAGTGTATTGAATGTGGGAAATCCTTCAGATGGAACTCTAACCTCGTCAT
ACATCAGAGAATTCATACTGGAGAGAAACCGTACGATTGCACTCACTGTGGAAAGTCCTTCAGCCAAAGC
TATCAGTTAGTTGCACATAAAAGAACTCACACTGGAGAAAAGCCCTATGAATGTAACGAGTGTGGAAAAG
CCTTCAATCGAAGCACTCAGCTCATCAGGCATCTGCAAATTCACACTGGGGAGAAGCCGTACAAATGCAA
TCAGTGCAATAAAGCCTTTGCAAGGAGCTCCTACCTTGTGATGCATCAGAGAACTCACACTGGTGAGAAA
CCTTTTGAGTGTAGTCAGTGTGGGAAAGCCTTTTCAGGGAGCTCTAACCTTCTTTCCCATCACAGAATTC
ATTCTGGAGAGAAACCCTATGAATGTAGTGACTGTGGGAAATCCTTCCGGCAGCAATCTCAACTTGTAGT
GCATCGGCGGACACATACTGGAGAGAAACCTTAG

Translation (687 aa):
MEARSMLVPPQASVCFEDVAMAFTQEEWEQLDLAQRTLYREVTLETWEHIVSLDWKATLEENRLNSEKDR
AREELSHHVEVYRSGPEEPPSLVLGKVQDQSNQLREHQENSLRFMVLTSERLFAQREHCELELGGGYSLP
STLSLLPTTLPTSTGFPKPNSQVKELKQNSAFINHEKNGADGKHCESHQCARAFCQSIYLSKLGNVETGK
KNPYEYIVSGDSLNYGSSLCFHGRTFSVKKSDDCKDYGNLFSHSVSLNEQKPVHFGKSQYECDECRETCS
ESLCLVQTERSGPGETPFRCEERCAAFPMASSFSDCNIIQTTEKPSVCNQCGKSFSCCKLIHQRTHTGEK
PFECTQCGKSFSQSYDLVIHQRTHTGEKPYECDLCGKSFTQRSKLITHQRIHTGEKPYQCIECRKSFRWN
SNLIVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTGEKPFKCTQCGKSFSQKYDLVVHQRTHTGEK
PYECNLCGKSFSQSSKLITHQRIHTGEKPYQCIECGKSFRWNSNLVIHQRIHTGEKPYDCTHCGKSFSQS
YQLVAHKRTHTGEKPYECNECGKAFNRSTQLIRHLQIHTGEKPYKCNQCNKAFARSSYLVMHQRTHTGEK
PFECSQCGKAFSGSSNLLSHHRIHSGEKPYECSDCGKSFRQQSQLVVHRRTHTGEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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