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Report for CCDS82411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82411.1 Public Homo sapiens 19 ZNF544 24 110 108 CCDS HistoryNCBI Gene:27300Re-query CCDS DB by CCDS ID:82411.1Re-query CCDS DB by GeneID:27300See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000596929.5 ENSP00000470645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596929.5Link to Ensembl Protein Viewer:ENSP00000470645.1Re-query CCDS DB by Nucleotide ID:ENST00000596929Re-query CCDS DB by Protein ID:ENSP00000470645
Original member Current member NCBI NM_001320782.3 NP_001307711.1 Accepted alive Link to Nucleotide Sequence:NM_001320782.3Link to Protein Sequence:NP_001307711.1Re-query CCDS DB by Nucleotide ID:NM_001320782Re-query CCDS DB by Protein ID:NP_001307711Link to BLAST:NP_001307711.1
Original member Current member NCBI NM_001387398.1 NP_001374327.1 Accepted alive Link to Nucleotide Sequence:NM_001387398.1Link to Protein Sequence:NP_001374327.1Re-query CCDS DB by Nucleotide ID:NM_001387398Re-query CCDS DB by Protein ID:NP_001374327Link to BLAST:NP_001374327.1
Original member Current member NCBI NM_001387399.1 NP_001374328.1 Accepted alive Link to Nucleotide Sequence:NM_001387399.1Link to Protein Sequence:NP_001374328.1Re-query CCDS DB by Nucleotide ID:NM_001387399Re-query CCDS DB by Protein ID:NP_001374328Link to BLAST:NP_001374328.1
Original member Current member NCBI NM_001387400.1 NP_001374329.1 Accepted alive Link to Nucleotide Sequence:NM_001387400.1Link to Protein Sequence:NP_001374329.1Re-query CCDS DB by Nucleotide ID:NM_001387400Re-query CCDS DB by Protein ID:NP_001374329Link to BLAST:NP_001374329.1

Chromosomal Locations for CCDS 82411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58244024 58244056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246301 58246427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58246711 58246794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58277183 58277232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGAAGCACGTTCTATGCTGGTTCCACCCCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCA
CACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTG
GGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAG
GACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAGGAACGAGGCCCAGCAAAAAGCAGAGACGGTACAGGG
CCAGAAGGATCTGA

Translation (97 aa):
MEARSMLVPPQASVCFEDVAMAFTQEEWEQLDLAQRTLYREVTLETWEHIVSLGLFLSKSDVISQLEQEE
DLCRAEQEAPRGTRPSKKQRRYRARRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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