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Report for CCDS82393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82393.1 Public Homo sapiens 19 ZNF415 24 110 108 CCDS HistoryNCBI Gene:55786Re-query CCDS DB by CCDS ID:82393.1Re-query CCDS DB by GeneID:55786See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000601493.5 ENSP00000472911.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601493.5Link to Ensembl Protein Viewer:ENSP00000472911.1Re-query CCDS DB by Nucleotide ID:ENST00000601493Re-query CCDS DB by Protein ID:ENSP00000472911
Original member Current member NCBI NM_001330759.2 NP_001317688.1 Accepted alive Link to Nucleotide Sequence:NM_001330759.2Link to Protein Sequence:NP_001317688.1Re-query CCDS DB by Nucleotide ID:NM_001330759Re-query CCDS DB by Protein ID:NP_001317688Link to BLAST:NP_001317688.1
Original member Current member NCBI NM_001352150.2 NP_001339079.1 Accepted alive Link to Nucleotide Sequence:NM_001352150.2Link to Protein Sequence:NP_001339079.1Re-query CCDS DB by Nucleotide ID:NM_001352150Re-query CCDS DB by Protein ID:NP_001339079Link to BLAST:NP_001339079.1
Original member Current member NCBI NM_001352151.2 NP_001339080.1 Accepted alive Link to Nucleotide Sequence:NM_001352151.2Link to Protein Sequence:NP_001339080.1Re-query CCDS DB by Nucleotide ID:NM_001352151Re-query CCDS DB by Protein ID:NP_001339080Link to BLAST:NP_001339080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317688.1 325 Q09FC8-3 325 100% 0 0
NP_001339079.1 325 Q09FC8-3 325 100% 0 0
NP_001339080.1 325 Q09FC8-3 325 100% 0 0

Chromosomal Locations for CCDS 82393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53108377 53109354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGACTGTACGTCAGGTAAGTCATTCTGGAGAGAAAGGATATAAATGTGATCTGTGTGGCAAGGTCTTTA
GTCAAAAATCAAACCTTGCGCGTCATTGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAATGAATG
TGACAGAAGTTTCAGTCGCAACTCATGCCTTGCACTACATCGGAGAGTTCACACTGGAGAGAAACCTTAC
AAATGTTATGAGTGTGACAAGGTCTTCAGTCGAAATTCATGCCTTGCACTACATCAGAAAACTCATATTG
GAGAGAAACCTTACACATGTAAAGAGTGTGGCAAAGCCTTTAGTGTGAGGTCAACACTTACCAACCATCA
GGTAATTCATAGTGGCAAGAAACCTTACAAATGCAATGAATGTGGCAAGGTGTTCAGTCAGACTTCAAGC
CTTGCAACTCATCAGAGAATTCACACTGGGGAGAAACCATACAAGTGTAATGAATGTGGTAAAGTCTTCA
GTCAGACTTCAAGCCTTGCAAGGCATTGGAGAATTCATACTGGAGAGAAACCTTACAAATGCAATGAATG
TGGTAAGGTTTTCAGTTACAATTCACACCTTGCGAGTCATCGGAGAGTTCATACTGGAGAGAAACCTTAC
AAGTGTAATGAGTGTGGGAAAGCCTTTAGTGTGCATTCGAACTTAACTACCCATCAGGTCATCCATACTG
GAGAGAAGCCTTACAAATGTAATCAATGTGGCAAAGGCTTCAGTGTGCATTCAAGCCTAACTACCCATCA
GGTCATCCATACTGGAGAAAAACCTTACAAATGTAATGAGTGTGGCAAATCCTTTAGTGTGCGCCCAAAC
CTCACTAGACATCAGATAATCCATACTGGAAAGAAACCTTACAAATGTAGTGATTGTGGGAAGTCCTTTA
GTGTGCGCCCAAACCTCTTCAGACATCAAATTATCCATACTAAGGAGAAACCTTATAAAAGAAATTAA

Translation (325 aa):
MTVRQVSHSGEKGYKCDLCGKVFSQKSNLARHWRVHTGEKPYKCNECDRSFSRNSCLALHRRVHTGEKPY
KCYECDKVFSRNSCLALHQKTHIGEKPYTCKECGKAFSVRSTLTNHQVIHSGKKPYKCNECGKVFSQTSS
LATHQRIHTGEKPYKCNECGKVFSQTSSLARHWRIHTGEKPYKCNECGKVFSYNSHLASHRRVHTGEKPY
KCNECGKAFSVHSNLTTHQVIHTGEKPYKCNQCGKGFSVHSSLTTHQVIHTGEKPYKCNECGKSFSVRPN
LTRHQIIHTGKKPYKCSDCGKSFSVRPNLFRHQIIHTKEKPYKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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