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Report for CCDS82329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82329.1 Public Homo sapiens 19 USF2 24 110 108 CCDS HistoryNCBI Gene:7392Re-query CCDS DB by CCDS ID:82329.1Re-query CCDS DB by GeneID:7392See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82329.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379134.7 ENSP00000368429.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379134.7Link to Ensembl Protein Viewer:ENSP00000368429.3Re-query CCDS DB by Nucleotide ID:ENST00000379134Re-query CCDS DB by Protein ID:ENSP00000368429
Original member Current member NCBI NM_001321150.2 NP_001308079.1 Accepted alive Link to Nucleotide Sequence:NM_001321150.2Link to Protein Sequence:NP_001308079.1Re-query CCDS DB by Nucleotide ID:NM_001321150Re-query CCDS DB by Protein ID:NP_001308079Link to BLAST:NP_001308079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308079.1 215 Q15853-4 215 100% 0 0

Chromosomal Locations for CCDS 82329.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35269102 35269163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35269446 35269492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35269581 35269699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35270759 35270805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35271083 35271141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35278698 35278792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35278946 35279074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35279167 35279256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGACATGCTGGACCCGGGTCTGGATCCCGCTGCCTCGGCCACCGCTGCTGCCGCCGCCAGCCACGACA
AGGGACCCGAGGCGGAGGAGGGCGTCGAGCTGCAGGAAGGCGGGGACGGCCCAGGAGCGGAGGAGCAGAC
AGCGGTGGCCATCACCAGCGTCCAGCAGGCGGCGTTCGGCGACCACAACATCCAGTACCAGTTCCGCACA
GAGACAAATGGAGGACAGACAGGAACACAGAGGACGATCGCCCCCCGGACACACCCTTACTCTCCAAAAA
TTGATGGAACCAGAACACCCCGAGATGAGAGGAGAAGAGCCCAGCACAACGAAGTGGAGCGGAGGCGGAG
GGACAAGATCAACAACTGGATCGTCCAGCTTTCGAAAATCATTCCAGACTGTAACGCAGACAACAGCAAG
ACGGGAGCGAGTAAAGGAGGGATCCTGTCCAAGGCCTGCGATTACATCCGGGAGTTGCGCCAGACCAACC
AGCGCATGCAGGAGACCTTCAAAGAGGCCGAGCGGCTGCAGATGGACAACGAGCTCCTGAGGCAGCAGAT
CGAGGAGCTGAAGAATGAGAACGCCCTGCTTCGAGCCCAGCTGCAGCAGCACAACCTGGAGATGGTGGGC
GAGGGCACCCGGCAGTGA

Translation (215 aa):
MDMLDPGLDPAASATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAITSVQQAAFGDHNIQYQFRT
ETNGGQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSK
TGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVG
EGTRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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