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Report for CCDS82106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82106.1 Public Homo sapiens 17 SLFN5 24 110 108 CCDS HistoryNCBI Gene:162394Re-query CCDS DB by CCDS ID:82106.1Re-query CCDS DB by GeneID:162394See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542451.1 ENSP00000440537.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542451.1Link to Ensembl Protein Viewer:ENSP00000440537.1Re-query CCDS DB by Nucleotide ID:ENST00000542451Re-query CCDS DB by Protein ID:ENSP00000440537
Original member Current member NCBI NM_001330183.2 NP_001317112.1 Accepted alive Link to Nucleotide Sequence:NM_001330183.2Link to Protein Sequence:NP_001317112.1Re-query CCDS DB by Nucleotide ID:NM_001330183Re-query CCDS DB by Protein ID:NP_001317112Link to BLAST:NP_001317112.1

Chromosomal Locations for CCDS 82106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35258691 35259702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35260971 35261096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35265072 35265103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGAGTCTTAGGATTGATGTGGATACAAACTTTCCTGAGTGTGTTGTAGATGCAGGAAAAGTCACCCTTG
GG
ACTCAGCAGAGGCAGGAGATGGACCCTCGCCTGCGGGAGAAACAGAATGAAATCATCCTGCGAGCAGT
A
TGTGCTCTGCTGAATTCTGGTGGGGGCATAATCAAGGCTGAGATTGAGAACAAAGGCTACAATTATGAA
CGT
CATGGAGTAGGATTGGATGTGCCTCCAATTTTCAGAAGCCATTTAGATAAGATGCAGAAGGAAAACC
AC
TTTTTGATTTTTGTGAAATCATGGAACACAGAGGCTGGTGTGCCACTTGCTACCTTATGCTCCAATTT
G
TACCACAGAGAGAGAACATCCACCGATGTCATGGATTCTCAGGAAGCTCTGGCATTCCTCAAATGCAGG
ACT
CAGACTCCAACGAATATTAATGTTTCCAATTCATTAGGTCCACAGGCAGCTCAGGGTAGTGTACAAT
AT
GAAGGTAACATAAATGTGTCAGCTGCTGCTTTATTTGATAGAAAGCGGCTTCAGTATCTGGAAAAACT
C
AACCTTCCTGAGTCCACACATGTTGAATTTGTAATGTTCTCGACAGACGTGTCACACTGTGTTAAAGAC
AGA
CTTCCGAAGTGTGTTTCTGCATTTGCAAATACTGAAGGAGGATATGTATTTTTTGGTGTGCATGATG
AG
ACTTGTCAAGTGATTGGATGTGAAAAAGAGAAAATAGACCTTACGAGCTTGAGGGCTTCTATTGATGG
C
TGTATTAAGAAGCTACCTGTCCATCATTTCTGCACACAGAGGCCTGAGATAAAATATGTCCTTAACTTC
CTT
GAAGTGCATGATAAGGGGGCCCTCCGTGGATATGTCTGTGCAATCAAGGTGGAGAAATTCTGCTGTG
CG
GTGTTTGCCAAAGTGCCTAGTTCCTGGCAGGTGAAGGACAACCGTGTGAGACAATTGCCCACAAGAGA
A
TGGACTGCTTGGATGATGGAAGCTGACCCAGACCTTTCCAGGTGTCCTGAGATGGTTCTCCAGTTGAGT
TTG
TCATCTGCCACGCCCCGCAGCAAGCCTGTGTGCATTCATAAGAATTCGGAATGTCTGAAAGAGCAGC
AG
AAACGCTACTTTCCAGTTTCAGCAAGAAAAACATCTGCCAGCCAGTGA


Translation (389 aa):
MSLRIDVDTNFPECVVDAGKVTLGTQQRQEMDPRLREKQNEIILRAVCALLNSGGGIIKAEIENKGYNYE
R
HGVGLDVPPIFRSHLDKMQKENHFLIFVKSWNTEAGVPLATLCSNLYHRERTSTDVMDSQEALAFLKCR
T
QTPTNINVSNSLGPQAAQGSVQYEGNINVSAAALFDRKRLQYLEKLNLPESTHVEFVMFSTDVSHCVKD
R
LPKCVSAFANTEGGYVFFGVHDETCQVIGCEKEKIDLTSLRASIDGCIKKLPVHHFCTQRPEIKYVLNF
L
EVHDKGALRGYVCAIKVEKFCCAVFAKVPSSWQVKDNRVRQLPTREWTAWMMEADP
DLSRCPEMVLQLS
L
SSATPRSKPVCIHKNSECLKEQQKRYFP
VSARKTSASQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser