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Report for CCDS82029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82029.1 Public Homo sapiens 16 TRAPPC2L 24 110 108 CCDS HistoryNCBI Gene:51693Re-query CCDS DB by CCDS ID:82029.1Re-query CCDS DB by GeneID:51693See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000561840.1 ENSP00000455892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561840.1Link to Ensembl Protein Viewer:ENSP00000455892.1Re-query CCDS DB by Nucleotide ID:ENST00000561840Re-query CCDS DB by Protein ID:ENSP00000455892
Original member Current member NCBI NM_001318526.2 NP_001305455.1 Accepted alive Link to Nucleotide Sequence:NM_001318526.2Link to Protein Sequence:NP_001305455.1Re-query CCDS DB by Nucleotide ID:NM_001318526Re-query CCDS DB by Protein ID:NP_001305455Link to BLAST:NP_001305455.1

Chromosomal Locations for CCDS 82029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88858704 88858789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88859573 88859750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88859893 88859972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88860914 88860959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGAGAAGATCTCCGCAATGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGGCCTGCTCTACCC
CACGGAGGACTACAAGGTTGCCACATTTCTCCAAAGTGAGGGCCCACAGAGGGCCCTCCACCGGCAGTCC
CTGTGTTACGAGTGCCTTCCCTAACCAGCTGTGCAGATACGGCTACGTCACCAACTCCAAGGTGAAGTTT
GTCATGGTGGTAGATTCCTCCAACACAGCCCTTCGAGACAACGAAATTCGCAGCATGTTCCGGAAGCTAC
ACAACTCCTACACAGACGTGATGTGCAACCCCTTCTACAACCCGGGGGACCGCATCCAGTCCAGGGCCTT
TGATAACATGGTGACGTCGATGATGATACAGGTGTGCTGA

Translation (129 aa):
MRRSPQWGRPWSTRGSCTWACSTPRRTTRLPHFSKVRAHRGPSTGSPCVTSAFPNQLCRYGYVTNSKVKF
VMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDNMVTSMMIQVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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