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Report for CCDS81802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81802.1 Public Homo sapiens 14 FANCM 24 110 108 CCDS HistoryNCBI Gene:57697Re-query CCDS DB by CCDS ID:81802.1Re-query CCDS DB by GeneID:57697See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81802.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000556036.6 ENSP00000450596.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556036.6Link to Ensembl Protein Viewer:ENSP00000450596.1Re-query CCDS DB by Nucleotide ID:ENST00000556036Re-query CCDS DB by Protein ID:ENSP00000450596
Original member Current member NCBI NM_001308134.2 NP_001295063.1 Accepted alive Link to Nucleotide Sequence:NM_001308134.2Link to Protein Sequence:NP_001295063.1Re-query CCDS DB by Nucleotide ID:NM_001308134Re-query CCDS DB by Protein ID:NP_001295063Link to BLAST:NP_001295063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295063.1 669 Q8IYD8-2 669 100% 0 0

Chromosomal Locations for CCDS 81802.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45136032 45136539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45137069 45137241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45140632 45140709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45148837 45148995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45151397 45151528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45153920 45154052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45154697 45154822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45155373 45155459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45159096 45159280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45164359 45164565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45166950 45167171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGAGCGGACGGCAAAGAACGCTTTTTCAGACGTGGGGCTCAAGTATCTCCCGATCATCTGGGACTCCGG
GTTGCAGCTCCGGAACTGAGCGACCTCAGAGCCCTGGCAGCTCCAAGGCGCCTTTGCCAGCAGCAGCGGA
GGCTCAGCTGGAGTCGGACGATGATGTGTTGCTTGTCGCGGCGTACGAGGCTGAGCGGCAGTTGTGTCTA
GAGAATGGCGGGTTCTGCACCTCCGCGGGCGCCCTGTGGATTTACCCTACCAATTGCCCAGTGCGGGACT
ACCAGCTGCACATTTCCCGGGCTGCTCTGTTTTGCAATACGCTGGTGTGTCTGCCTACCGGACTGGGAAA
GACCTTTATTGCCGCCGTGGTCATGTACAATTTCTACCGCTGGTTCCCTTCAGGAAAGGTGGTCTTCATG
GCCCCAACGAAACCCTTGGTGACACAGCAGATCGAGGCTTGCTACCAGGTGATGGGTATCCCGCAATCCC
ACATGGCCGAAATGACAGGGTCTACACAAGCTTCCACCAGGAAGGAAATATGGTGCAGTAAGAGAGTGCT
TTTTCTTACACCTCAGGTCATGGTAAATGACCTTTCTAGAGGAGCTTGTCCCGCTGCTGAAATAAAGTGT
TTAGTTATTGATGAAGCTCATAAAGCTCTCGGAAACTATGCTTATTGCCAGGTTGTAAGAGAACTAGTCA
AATATACAAATCACTTTAGAATCTTGGCTCTAAGTGCCACACCAGGTAGTGATATAAAGGCTGTGCAACA
AGTTATTACTAACCTGCTAATTGGGCAGATAGAGCTTCGTTCTGAAGATTCTCCAGATATTTTGACATAT
TCTCATGAAAGAAAAGTTGAAAAGCTTATTGTTCCGCTTGGTGAAGAACTTGCAGCCATCCAAAAGACCT
ATATCCAGATTTTGGAATCATTTGCTCGTTCTTTGATTCAGAGGAATGTTTTGATGAGAAGGGATATCCC
AAATCTAACAAAATATCAGATAATTCTGGCAAGAGATCAGTTTAGGAAAAACCCATCTCCGAATATTGTG
GGAATACAACAAGGCATAATCGAGGGAGAGTTTGCTATTTGTATTAGTTTATATCATGGTTATGAATTAT
TGCAGCAAATGGGAATGAGATCATTATATTTCTTCCTTTGTGGAATTATGGATGGAACTAAAGGGATGAC
ACGGTCAAAAAATGAACTTGGCCGAAATGAAGACTTCATGAAACTCTATAATCATCTAGAGTGTATGTTT
GCACGTACACGTAGTACTTCAGCAAATGGTATTTCTGCTATCCAACAAGGAGATAAAAATAAAAAATTTG
TTTATAGTCATCCAAAGTTAAAGAAATTAGAAGAAGTTGTAATTGAACACTTCAAGTCATGGAATGCTGA
AAACACTACTGAAAAGAAACGTGATGAGACCCGAGTTATGATCTTCTCTTCATTTCGAGATAGTGTTCAA
GAAATTGCAGAAATGCTTTCACAGCATCAGCCAATTATTAGAGTAATGACTTTTGTCGGCCATGCCTCAG
GGAAAAGCACGAAGGGTTTTACCCAGAAGGAGCAACTGGAGGTAGTGAAACAGTTTCGTGACGGTGGTTA
CAACACGCTGGTTTCTACCTGTGTGGGTGAAGAAGGTTTGGATATAGGAGAAGTTGATCTTATAATATGT
TTTGATTCCCAGAAGAGCCCAATTCGTCTTGTACAACGAATGGGTAGAACTGGCCGTAAACGTCAAGGCA
GGATAGTTATTATCCTTTCTGAAGGACGAGAGGAACGTATTTATAATCAGAGTCAGTCCAACAAAAGAAG
TATATATAAAGCTATTTCAAGTAACAGGCAGGTCCTTCATTTTTACCAAAGAAGTCCACGAATGGTTCCT
GATGGAATCAACCCAAAATTACACAAAATGTTCATCACACATGGTGTCTATGAACCAGAGAAGCCTTCTC
GGAACTTGCAGCGAAAGTCATCTATCTTTTCCTATAGGGATGGTAAATAA

Translation (669 aa):
MSGRQRTLFQTWGSSISRSSGTPGCSSGTERPQSPGSSKAPLPAAAEAQLESDDDVLLVAAYEAERQLCL
ENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFM
APTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAAEIKC
LVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTY
SHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIV
GIQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMF
ARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQ
EIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIIC
FDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQSQSNKRSIYKAISSNRQVLHFYQRSPRMVP
DGINPKLHKMFITHGVYEPEKPSRNLQRKSSIFSYRDGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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