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Report for CCDS81627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81627.1 Public Homo sapiens 11 TTC12 24 110 108 CCDS HistoryNCBI Gene:54970Re-query CCDS DB by CCDS ID:81627.1Re-query CCDS DB by GeneID:54970See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000483239.6 ENSP00000419652.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483239.6Link to Ensembl Protein Viewer:ENSP00000419652.2Re-query CCDS DB by Nucleotide ID:ENST00000483239Re-query CCDS DB by Protein ID:ENSP00000419652
Original member Current member NCBI NM_001318533.2 NP_001305462.1 Accepted alive Link to Nucleotide Sequence:NM_001318533.2Link to Protein Sequence:NP_001305462.1Re-query CCDS DB by Nucleotide ID:NM_001318533Re-query CCDS DB by Protein ID:NP_001305462Link to BLAST:NP_001305462.1

Chromosomal Locations for CCDS 81627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113316258 113316315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113323288 113323451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113323994 113324015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113324605 113324682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113325524 113325645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113329920 113329979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113334948 113335037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113338774 113338834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113339286 113339474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113340664 113340733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113341837 113341925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113344272 113344440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113350073 113350165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113351239 113351299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113352070 113352207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113359363 113359461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113359940 113360008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113362401 113362502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113363828 113363927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113364835 113365060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113366225 113366300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGATGCTGATAAAGAGAAAGATTTGCAGAAATTTCTTAAAAATGTGGATGAAATCTCCAATTTAATTC
AGGAGATGAATTCTGATGACCCAGTTGTGCAACAGAAAGCTGTCCTGGAGACAGAAAAGAGACTACTGCT
TATGGAGGAAGACCAGGAGGAGGATGAATGCAGGACCACCTTGAACAAGACTATGATCAGTCCTCCACAA
ACTGCTATGAAGAGTGCAGAAGAAATAAACTCAGAGGCCTTCTTGGCATCTGTGGAGAAGGATGCAAAGG
AACGAGCCAAGAGAAGAAGGGAAAACAAAGTCTTGGCGGATGCCCTAAAAGAAAAAGGGAATGAAGCATT
TGCTGAAGGCAATTATGAAACAGCTATCCTGCGCTACAGTGAGGGTTTGGAGAAGCTGAAGGACATGAAA
GTGCTGTACACCAACCGAGCCCAGGCTTATATGAAACTTGAGGACTATGAGAAGGCACTGGTGGATTGTG
AGTGGGCTCTCAAGTCATTCTCTTTTATGCAGTGTGATGAAAAATGCACAAAAGCATATTTTCACATGGG
AAAAGCCAACCTGGCCCTGAAGAACTACAGTGTGTCTAGAGAGTGTTATAAGAAGATCTTAGAAATAAAC
CCCAAGCTGCAAACCCAGGTGAAAGGTTACCTGAATCAAGTAGATCTTCAGGAAAAAGCAGACCTTCAAG
AAAAGGAAGCCCACGAACTGCTGGATTCAGGAAAGAACACAGCCGTGACCACCAAGAACCTCCTGGAGAC
CCTTTCCAAGCCTGACCAGATCCCCTTGTTCTATGCTGGGGGGATTGAGATCCTGACTGAAATGATAAAT
GAGTGCACAGAACAAACTTTATTCAGAATGCACAATGGATTTAGTATCATCAGTGACAACGAGGTCATAA
GAAGGTGTTTTTCCACAGCAGGAAATGATGCAGTTGAAGAAATGGTCTGTGTGTCTGTTCTCAAGCTCTG
GCAAGCAGTGTGCAGCAGGAACGAGGAAAACCAGCGTGTGCTAGTGATACACCATGACAGGGCCAGGCTG
TTGGCCGCCCTCTTGTCCTCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGCTGCTGCATCTCG
CCCAGACTGAGAGCGGACGGAGCCTGATCATCAACCACCTTGACCTGACCAGATTATTGGAAGCGCTGGT
GTCATTTCTTGATTTCTCGGATAAGGAGGCCAACACTGCTATGGGACTGTTCACAGACTTGGCTCTGGAA
GAAAGATTCCAAGTCTGGTTCCAGGCCAACCTTCCAGGTGTTCTCCCTGCACTCACAGGCGTTCTGAAGA
CAGATCCCAAGGTAAGCAGCTCCTCGGCTCTGTGCCAGTGCATTGCCATCATGGGAAACCTCAGTGCTGA
GCCCACTACCCGAAGACACATGGCGGCCTGTGAGGAATTTGGGGATGGCTGCTTGAGCCTCCTGGCCAGG
TGTGAGGAGGATGTGGACCTGTTCAGAGAGGTTATCTACACACTCCTGGGACTCATGATGAACCTGTGTC
TTCAGGCTCCCTTTGTCTCTGAGGTTTGGGCTGTGGAGGTGAGCAGAAGGTGCCTGTCTTTACTAAACAG
CCAGGATGGAGGAATCCTGACAAGAGCTGCTGGTGTTCTGAGCCGGACCCTTTCTTCCTCTCTGAAAATT
GTTGAGGAGGCCTTGCGAGCAGGAGTGGTAAAGAAAATGATGAAATTCCTGAAGACAGGAGGTGAGACTG
CATCACGTTATGCTATAAAGATACTAGCTATCTGCACGAATAGTTATCATGAAGCTCGGGAAGAAGTAAT
AAGACTGGATAAAAAGTTGAGCGTTATGATGAAGCTGCTCAGCTCGGAGGATGAGGTTCTGGTGGGCAAC
GCTGCCCTCTGCCTTGGTAACTGCATGGAGGTGCCCAACGTTGCGTCTTCCCTGCTAAAGACGGACCTTT
TGCAGGTCTTGTTAAAGCTTGCAGGCAGTGACACACAGAAGACGGCCGTGCAGGTGAACGCAGGCATTGC
TCTGGGGAAGCTGTGCACAGCTGAGCCCAGATTTGCTGCTCAACTGAGAAAGCTTCATGGCCTAGAAATT
CTCAACTCTACGATGAAATACATCAGTGATTCTTGA

Translation (711 aa):
MDADKEKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISPPQ
TAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMK
VLYTNRAQAYMKLEDYEKALVDCEWALKSFSFMQCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEIN
PKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMIN
ECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARL
LAALLSSKVLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALE
ERFQVWFQANLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLAR
CEEDVDLFREVIYTLLGLMMNLCLQAPFVSEVWAVEVSRRCLSLLNSQDGGILTRAAGVLSRTLSSSLKI
VEEALRAGVVKKMMKFLKTGGETASRYAIKILAICTNSYHEAREEVIRLDKKLSVMMKLLSSEDEVLVGN
AALCLGNCMEVPNVASSLLKTDLLQVLLKLAGSDTQKTAVQVNAGIALGKLCTAEPRFAAQLRKLHGLEI
LNSTMKYISDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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