NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81360.1 Public Homo sapiens 1 TBX15 24 110 108 CCDS HistoryNCBI Gene:6913Re-query CCDS DB by CCDS ID:81360.1Re-query CCDS DB by GeneID:6913See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369429.5 ENSP00000358437.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369429.5Link to Ensembl Protein Viewer:ENSP00000358437.3Re-query CCDS DB by Nucleotide ID:ENST00000369429Re-query CCDS DB by Protein ID:ENSP00000358437
Original member Current member NCBI NM_001330677.2 NP_001317606.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330677.2Link to Protein Sequence:NP_001317606.1Re-query CCDS DB by Nucleotide ID:NM_001330677Re-query CCDS DB by Protein ID:NP_001317606Link to BLAST:NP_001317606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317606.1 602 Q96SF7-1 602 100% 0 0

Chromosomal Locations for CCDS 81360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 118884732 118885516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118899028 118899125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118914115 118914179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118923436 118923603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118924646 118924817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118926510 118926611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118931619 118931832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118987591 118987795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGAGTGAAAGGAGAAGATCTGCAGTCGCCCTGAGCTCGCGAGCACATGCCTTCTCCGTTGAAGCCTTGA
TCGGCTCAAATAAAAAACGGAAACTGCGAGACTGGGAGGAGAAGGGGCTGGACCTGTCTATGGAGGCGCT
GAGCCCCGCGGGCCCACTCGGAGACACGGAGGACGCGGCGGCACACGGCCTGGAGCCTCACCCGGATTCT
GAGCAGAGCACTGGTTCAGATTCTGAGGTCCTCACTGAGCGGACTTCCTGCTCCTTCAGTACTCACACTG
ACCTGGCCTCTGGTGCTGCAGGCCCTGTGCCTGCTGCCATGTCTTCCATGGAGGAGATTCAGGTGGAGCT
GCAATGTGCTGACCTCTGGAAGCGGTTCCATGATATTGGAACTGAAATGATCATCACCAAAGCAGGCAGG
AGGATGTTTCCTGCCATGAGAGTGAAAATCACTGGCCTAGATCCACATCAGCAGTACTACATAGCAATGG
ACATTGTGCCTGTGGACAATAAAAGATACAGATATGTGTATCATAGCTCCAAGTGGATGGTGGCTGGCAA
TGCTGATTCCCCTGTGCCCCCAAGAGTTTATATACACCCTGATTCTCTAGCTTCTGGAGACACCTGGATG
AGACAGGTGGTCAGTTTTGACAAACTCAAGCTTACCAACAATGAGTTGGATGATCAAGGACATATCATTC
TGCACTCTATGCACAAATACCAGCCTCGAGTTCATGTGATTCGCAAAGACTTCAGCAGTGACCTTTCACC
CACTAAGCCTGTTCCTGTTGGGGATGGGGTGAAAACGTTCAACTTTCCTGAGACTGTGTTCACCACAGTT
ACGGCCTATCAGAATCAGCAGATTACCAGATTAAAAATTGACCGAAACCCTTTTGCTAAAGGATTCAGAG
ATTCTGGGAGAAACAGAACTGGACTTGAAGCCATCATGGAGACATATGCATTCTGGAGACCTCCTGTGCG
CACACTCACCTTCGAAGACTTCACCACCATGCAGAAGCAGCAAGGAGGCAGCACAGGCACTTCCCCAACC
ACCTCCAGCACTGGGACACCATCCCCTTCGGCTTCTTCTCATCTTTTATCTCCATCCTGTTCTCCTCCAA
CTTTTCATCTGGCCCCCAACACTTTCAATGTGGGCTGCCGAGAAAGCCAGCTGTGTAATCTAAACCTCTC
TGATTATCCACCATGTGCCCGAAGCAACATGGCTGCCTTGCAGAGCTACCCAGGGCTGAGTGACAGTGGC
TACAACAGGCTTCAGAGTGGCACCACTTCAGCCACTCAGCCCTCTGAAACCTTCATGCCTCAGAGGACTC
CATCCCTGATCTCAGGAATACCAACTCCTCCCTCGTTGCCTGGCAACAGCAAGATGGAAGCCTACGGTGG
CCAGCTGGGGTCCTTTCCCACTTCCCAGTTTCAGTATGTCATGCAGGCAGGCAATGCTGCCTCCAGCTCC
TCATCACCACACATGTTCGGGGGCAGCCACATGCAGCAGAGCTCCTACAATGCCTTCTCCCTTCACAACC
CTTACAACCTGTATGGATACAATTTCCCCACTTCCCCTAGGCTAGCTGCAAGCCCGGAAAAACTGAGCGC
CTCTCAAAGCACTTTACTCTGTTCTTCTCCTTCCAACGGGGCCTTTGGAGAGAGGCAGTACCTGCCGTCA
GGGATGGAGCACAGCATGCACATGATTAGCCCTTCACCCAATAACCAACAGGCAACCAACACTTGTGATG
GCCGGCAGTATGGGGCAGTTCCAGGCTCCTCCTCCCAGATGTCCGTGCACATGGTTTAA

Translation (602 aa):
MSERRRSAVALSSRAHAFSVEALIGSNKKRKLRDWEEKGLDLSMEALSPAGPLGDTEDAAAHGLEPHPDS
EQSTGSDSEVLTERTSCSFSTHTDLASGAAGPVPAAMSSMEEIQVELQCADLWKRFHDIGTEMIITKAGR
RMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSLASGDTWM
RQVVSFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDFSSDLSPTKPVPVGDGVKTFNFPETVFTTV
TAYQNQQITRLKIDRNPFAKGFRDSGRNRTGLEAIMETYAFWRPPVRTLTFEDFTTMQKQQGGSTGTSPT
TSSTGTPSPSASSHLLSPSCSPPTFHLAPNTFNVGCRESQLCNLNLSDYPPCARSNMAALQSYPGLSDSG
YNRLQSGTTSATQPSETFMPQRTPSLISGIPTPPSLPGNSKMEAYGGQLGSFPTSQFQYVMQAGNAASSS
SSPHMFGGSHMQQSSYNAFSLHNPYNLYGYNFPTSPRLAASPEKLSASQSTLLCSSPSNGAFGERQYLPS
GMEHSMHMISPSPNNQQATNTCDGRQYGAVPGSSSQMSVHMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH