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Report for CCDS81193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81193.1 Public Mus musculus X Scml2 23 108 98 CCDS HistoryNCBI Gene:107815Re-query CCDS DB by CCDS ID:81193.1Re-query CCDS DB by GeneID:107815See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074802.11 ENSMUSP00000074356.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074802.11Link to Ensembl Protein Viewer:ENSMUSP00000074356.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074802Re-query CCDS DB by Protein ID:ENSMUSP00000074356
Original member Current member NCBI NM_001290652.1 NP_001277581.1 Accepted alive Link to Nucleotide Sequence:NM_001290652.1Link to Protein Sequence:NP_001277581.1Re-query CCDS DB by Nucleotide ID:NM_001290652Re-query CCDS DB by Protein ID:NP_001277581Link to BLAST:NP_001277581.1

Chromosomal Locations for CCDS 81193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 161171514 161171535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161177247 161177317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161178037 161178271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161187264 161187352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161192204 161192447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161202014 161202097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161209195 161209269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161209609 161209683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161213241 161213324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161215180 161215263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161221666 161221749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161224461 161224544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161225877 161225960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161227373 161227456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161228677 161228760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161230091 161230174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161234613 161234696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161237492 161237757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161239750 161239864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161241988 161242191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161243366 161243548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161246257 161246367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161256566 161256573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGGGCAAACAGCGAATGAAGATCATTTTGACTGGGACAAGTACTTGAAAGAGACTGGATCGATAAGTG
CTCCTTCTGAATATTTCAGACAGTCTAAGACTCCACCAACTAATGAATTCAAAATTGGTATGAAATTGGA
AGCCCGTGACCCTCGCAATATTGATTCGGTGTGTGTTGCTTCGGTCATTGGAATTACTGGAGCCAGGTTA
CGTCTACGACTGGATGGTAGTGACAATAAGAATGATTTTTGGAGACTTGTGGATTCATCAGACATACAAC
CTGTTGGGACGTGTGAACAAGGAGGAGATTTACTTCAGCCTCCACTGGGGTACACACTGAATACTTCATC
ATGGCCCATGTTCTTACTACGTGTACTAACTGGATCTGAACTGGCACCTGCAGTGTTCTTTAAGGAGGAA
CCACCACGTCCACTCCAAAATAATTTCATAGTTGGGATGAAGATTGAAGCTGTCGATAGAAAAAATCCAT
TTATGATCTGTCCTGCCACAATTGGAGCTGTCTGTGGAGATCAACTTCATATCACTTTTGATGGATGGAG
TGGAGCATTTGATTATTGGTGTGACTATGACTCCCGAGACATCTTCCCAGTTGGATGGTGTCGCCTCACA
GGAGATGTATTACAGCCACCAGGAAAAATTGTTGAAAAAAGACCAAGGCGCAAAAGAAGAACCAGACTAT
GGAGACTTAGAACTGCTCTTTTGGGAAATGAAGAAGAGGCCCCAGAAGCTGCAGAAGAACCTGGGACCAG
TGTACTTACTTTTGGAGATGAAAACAGAACTTTGAAAGATTGCCGAGGAGAAGCTGCAGAAGAACCTGGG
ACCAGTGCATTTACTTTTGGAGATGAAAACAGAACTTTGAAAGATTGCCAAGGAGGTTGGAAAAAACCCA
AGGGCAGAGGATTCATCAAACCTGGAAAAGATGAAACCAGACCTGGGAAACATGACCAAGGAGCCCCAGC
TGGGAAAAAACCCAGGGGCAGAGGATTCACCCAACCTTTGGAAGATGAAGCCAGACCAGGAAGAGATGTC
CAAGTAGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGAC
TTTTTGCAGATCAAGGAGATGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGAC
TGAGGATCCCAGACTTTTTGCAGATCAAGGAGCAGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTC
ACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGCTGAGAAAAAACGCA
AGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGC
TGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAA
GGAGCAGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGAC
TTTTTGCAGATCAAGGAGATGCCCCAGCTGAAAAAAAACCCAAGGGCAAAAGAGTCACCAAATCTCGGAA
AGACCAAGCCCAGTTTTTAGCTGATGAAGAAGCAATGCCAGCTCTTAGTGTGAGCAGTACAGAGAGAACA
CCACCTTCTTCCTCTGAACAACCAAAGTCTTCTACCTCTGGGAAAACAAAATCCACCTCTAGAGGGGCTC
AAACTTCAAGGAAGTCTCCACGGAAAACAAGTGTTGTGCAACCAGTACCAAAGACCAGCAAGAAAGCAGG
AAAATCTAAGTCTACTGGAAATACTTCATCCCCTAAGAAGGGCATTACTATTAAAATTGTCCTACCAAAG
AAAAAGGGTGGAAAGTCTGGAAAAAAGGAAAAAAGTATTCCAGTTATTTCTTCTACATCTTCAGCTTCTT
TAAGTACACTGATGAAAAGTTCTTCATCTAATAAGACTTCTGCGGGGCCATCTAAAATAGTGATGTCTAC
AGTTTGTGTGTATATAAATAAACATGGAGATTGTGGCCCCTTCCTGGATCCACAGAAGGTTCAGCAGCTA
CCTAACCACTTCGGTCCAGGCCCTGTGAATGTCATTCTCCAGCGGACTGTGCAGGCCTGTGTCAATTGTG
CCTTTCAGGCCAAGGATGTGTTTCTATTTCTTAAAACAGATAATAGAGGAGGAGAAATGATAACTGCCTT
CTTTGATGGGAAAGTTCATACTGTTCAGCTCCCTCCAGTGAATAGTGCATCATTTGCACTTCGCTTTCTT
GAAAATTTCTGCCAAAGCCTGCAGTGTGATAACTTTTTGAGTAGCCAGCCTTTCAGACGTGAGGCTCAAG
TTCCTACCCCAGATACAGGCACTGATCAAAGCAAACCAGAAAATGGGGAACCAAAGGAAAAGAGAAGCCT
CAAACGATTGTCTCTGCATCCTCATCGTTCTGCTCCTGTCTCATCTAAGGTTCCCAGAAAGTCTGGGCAA
GCGTCTAAAGGAAATTGA

Translation (845 aa):
MGQTANEDHFDWDKYLKETGSISAPSEYFRQSKTPPTNEFKIGMKLEARDPRNIDSVCVASVIGITGARL
RLRLDGSDNKNDFWRLVDSSDIQPVGTCEQGGDLLQPPLGYTLNTSSWPMFLLRVLTGSELAPAVFFKEE
PPRPLQNNFIVGMKIEAVDRKNPFMICPATIGAVCGDQLHITFDGWSGAFDYWCDYDSRDIFPVGWCRLT
GDVLQPPGKIVEKRPRRKRRTRLWRLRTALLGNEEEAPEAAEEPGTSVLTFGDENRTLKDCRGEAAEEPG
TSAFTFGDENRTLKDCQGGWKKPKGRGFIKPGKDETRPGKHDQGAPAGKKPRGRGFTQPLEDEARPGRDV
QVAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGAAPAEKKRKGKTV
TTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQ
GAAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKPKGKRVTKSRKDQAQFLADEEAMPALSVSSTERT
PPSSSEQPKSSTSGKTKSTSRGAQTSRKSPRKTSVVQPVPKTSKKAGKSKSTGNTSSPKKGITIKIVLPK
KKGGKSGKKEKSIPVISSTSSASLSTLMKSSSSNKTSAGPSKIVMSTVCVYINKHGDCGPFLDPQKVQQL
PNHFGPGPVNVILQRTVQACVNCAFQAKDVFLFLKTDNRGGEMITAFFDGKVHTVQLPPVNSASFALRFL
ENFCQSLQCDNFLSSQPFRREAQVPTPDTGTDQSKPENGEPKEKRSLKRLSLHPHRSAPVSSKVPRKSGQ
ASKGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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