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Report for CCDS81146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81146.1 Public Mus musculus X Obp1b 23 108 98 CCDS HistoryNCBI Gene:628991Re-query CCDS DB by CCDS ID:81146.1Re-query CCDS DB by GeneID:628991See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088198.3 ENSMUSP00000085528.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088198.3Link to Ensembl Protein Viewer:ENSMUSP00000085528.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088198Re-query CCDS DB by Protein ID:ENSMUSP00000085528
Original member Current member NCBI NM_001310328.1 NP_001297257.1 Accepted alive Link to Nucleotide Sequence:NM_001310328.1Link to Protein Sequence:NP_001297257.1Re-query CCDS DB by Nucleotide ID:NM_001310328Re-query CCDS DB by Protein ID:NP_001297257Link to BLAST:NP_001297257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297257.1 171 A2AEP0 171 100% 0 0

Chromosomal Locations for CCDS 81146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78186827 78186898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78187348 78187487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78188509 78188582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78190212 78190322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78191009 78191110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78191445 78191461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGATGGTGAAGTTTCTGCTGCTGGCATTGGTATTTGGACTGGCCCATGTCCATGCTCATGATCATCCTG
AGTTACAAGGACAATGGAAAACCACTGCCATCATGGCTGATAATATTGACAAGATAGAGACGAGTGGTCC
CCTGGAGCTCTTTGTTCGTGAAATTACTTGTGATGAGGGATGTCAAAAAATGAAAGTCACATTTTATGTC
AAGCAAAATGGACAATGCTCATTGACCACAGTCACTGGGTATAAGCAAGAAGATGGCAAGACTTTTAAAA
ACCAGTATGAAGGTGAAAATAACTATAAACTGTTGAAAGCAACATCAGAGAATTTAGTCTTTTATGATGA
GAATGTGGACAGAGCCAGCCGGAAAACAAAATTGTTGTATATTCTTGGAAAGGGTGAAGCTCTAACTCAT
GAGCAAAAGGAAAGACTTACTGAGTTAGCTACTCAAAAAGGCATTCCAGCTGGAAACCTTAGAGAACTCG
CACATGAAGATACCTGTCCAGAGTAA

Translation (171 aa):
MMVKFLLLALVFGLAHVHAHDHPELQGQWKTTAIMADNIDKIETSGPLELFVREITCDEGCQKMKVTFYV
KQNGQCSLTTVTGYKQEDGKTFKNQYEGENNYKLLKATSENLVFYDENVDRASRKTKLLYILGKGEALTH
EQKERLTELATQKGIPAGNLRELAHEDTCPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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