NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80491.1 Public Mus musculus 6 Ing3 23 108 98 CCDS HistoryNCBI Gene:71777Re-query CCDS DB by CCDS ID:80491.1Re-query CCDS DB by GeneID:71777See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 80491.1
This coding region lacks full length transcript support. Hence this CCDS representation is inferred, but it is supported by mouse RNA-seq and orthologous data.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 80491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115389.7 ENSMUSP00000111047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115389.7Link to Ensembl Protein Viewer:ENSMUSP00000111047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115389Re-query CCDS DB by Protein ID:ENSMUSP00000111047
Original member Current member NCBI NM_001311061.1 NP_001297990.1 Accepted alive Link to Nucleotide Sequence:NM_001311061.1Link to Protein Sequence:NP_001297990.1Re-query CCDS DB by Nucleotide ID:NM_001311061Re-query CCDS DB by Protein ID:NP_001297990Link to BLAST:NP_001297990.1

Chromosomal Locations for CCDS 80491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 21949766 21949793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21950038 21950109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21952129 21952229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21953763 21953828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21965734 21965830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21967627 21967698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21968918 21969004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21969278 21969435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21969914 21970107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21971107 21971308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21971811 21971849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21973583 21973699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGTTGTACCTAGAGGACTATTTGGAAATGATTGAGCAGCTTCCGATGGACCTACGGGACCGCTTCACGG
AGATGCGCGAGATGGATCTGCAGGTGCAGAATGCAATGGATCAACTAGAACAAAGAGTCAGTGAGTTCTT
TATGAATGCAAAGAAGAATAAACCCGAGTGGCGAGAAGAACAGATGGCATCCATCAAAAAAGACTACTAT
AAAGCTTTGGAAGATGCAGATGAGAAAGTACAGTTGGCAAACCAGATTTATGATTTGGTAGATCGCCACT
TGAGAAAGCTGGATCAGGAACTGGCCAAGTTTAAAATGGAGCTGGAAGCCGATAATGCTGGAATTACAGA
AATACTAGAGAGGCGATCTTTGGAATTAGATGCTCCTTCGCAGCCAGTGAACAATCACCACGCTCATTCA
CATACTCCCGTGGAAACAGCAGACCATATCCCTGAGAAGAAATTCAAATCTGAAGCGCTGCTGTCCACCC
TTACATCTGACGCTTCCAAGGAGAACACGCTGGGTTGTCGGAACAATAATTCCACAGCTTCCTGCAACAA
TGCTTACAATGTGAACTCGTCCCAGCCCCTGGCCTCCTATAACATTGGTTCATTATCTTCAGGGGCTGGC
GCAGGGGCCATCACCATGGCGGCAGCACAGGCCGTGCAAGCGACAGCACAGATGAAAGAAGGGCGAAGAA
CATCGAGTTTAAAAGCCAGTTACGAAGCATTTAAGAACAATGACTTCCAGCTGGGAAAAGAATTTTCCAT
ACCCAGAGAAACAGCTGGCTACTCCTCCTCATCGGCACTCATGACAACCTTAACCCAGAATGCCAGTTCC
TCCGCCACGGACTCGCGGAGTGGCAGGAAGAGCAAAAACAACACCAAGTCTTCAAGCCAGCAGTCGTCGT
CCTCCTCCTCCTCGTCGTCCTCTTCCTCCTTATCTCTGTGTTCATCGTCTTCAACTGTAGTACAAGAAGT
TTCCCAGCAAGCAACTGTAGTGCCCGAATCTGACTCCAACAGTCAAGTCGATTGGACTTACGACCCAAAT
GAACCTCGGTATTGCATCTGTAATCAGGTATCCTATGGAGAGATGGTGGGATGTGATAACCAAGATTGTC
CAATAGAGTGGTTCCACTATGGGTGTGTTGGCTTGACCGAAGCGCCGAAGGGGAAGTGGTTCTGTCCGCA
GTGCACCGCTGCCATGAAGAGAAGAGGCAGTCGGCACAAATAG

Translation (410 aa):
MLYLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYY
KALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELEADNAGITEILERRSLELDAPSQPVNNHHAHS
HTPVETADHIPEKKFKSEALLSTLTSDASKENTLGCRNNNSTASCNNAYNVNSSQPLASYNIGSLSSGAG
AGAITMAAAQAVQATAQMKEGRRTSSLKASYEAFKNNDFQLGKEFSIPRETAGYSSSSALMTTLTQNASS
SATDSRSGRKSKNNTKSSSQQSSSSSSSSSSSSLSLCSSSSTVVQEVSQQATVVPESDSNSQVDWTYDPN
EPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWFCPQCTAAMKRRGSRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH