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Report for CCDS8043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8043.1 Public Homo sapiens 11 SLC22A9 24 110 108 CCDS HistoryNCBI Gene:114571Re-query CCDS DB by CCDS ID:8043.1Re-query CCDS DB by GeneID:114571See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8043.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279178.4 ENSP00000279178.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279178.4Link to Ensembl Protein Viewer:ENSP00000279178.3Re-query CCDS DB by Nucleotide ID:ENST00000279178Re-query CCDS DB by Protein ID:ENSP00000279178
Original member Current member NCBI NM_080866.3 NP_543142.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080866.3Link to Protein Sequence:NP_543142.2Re-query CCDS DB by Nucleotide ID:NM_080866Re-query CCDS DB by Protein ID:NP_543142Link to BLAST:NP_543142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543142.2 553 Q8IVM8-1 553 100% 0 0

Chromosomal Locations for CCDS 8043.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63370057 63370458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63371135 63371238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63373644 63373798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63373894 63374062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63375645 63375768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63382159 63382277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63406497 63406711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63408112 63408220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63408676 63408879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63409802 63409862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCCTTTCAGGACCTCCTGGGTCACGCTGGTGACCTGTGGAGATTCCAGATCCTTCAGACTGTTTTTC
TCTCAATCTTTGCTGTTGCTACATACCTTCATTTTATGCTGGAGAACTTCACTGCATTCATACCTGGCCA
TCGCTGCTGGGTCCACATCCTGGACAATGACACTGTCTCTGACAATGACACTGGGGCCCTCAGCCAAGAT
GCACTCTTGAGAATCTCCATCCCACTGGACTCAAACATGAGGCCAGAGAAGTGTCGTCGCTTTGTTCATC
CTCAGTGGCAGCTCCTTCACCTGAATGGGACCTTCCCCAACACAAGTGACGCAGACATGGAGCCCTGTGT
GGATGGCTGGGTGTATGACAGAATCTCCTTCTCATCCACCATCGTGACTGAGTGGGATCTGGTATGTGAC
TCTCAATCACTGACTTCAGTGGCTAAATTTGTATTCATGGCTGGAATGATGGTGGGAGGCATCCTAGGCG
GTCATTTATCAGACAGGTTTGGGAGAAGGTTCGTGCTCAGATGGTGTTACCTCCAGGTTGCCATTGTTGG
CACCTGTGCAGCCTTGGCTCCCACCTTCCTCATTTACTGCTCACTACGCTTCTTGTCTGGGATTGCTGCA
ATGAGCCTCATAACAAATACTATTATGTTAATAGCCGAGTGGGCAACACACAGATTCCAGGCCATGGGAA
TTACATTGGGAATGTGCCCTTCTGGTATTGCATTTATGACCCTGGCAGGCCTGGCTTTTGCCATTCGAGA
CTGGCATATCCTCCAGCTGGTGGTGTCTGTACCATACTTTGTGATCTTTCTGACCTCAAGTTGGCTGCTA
GAGTCTGCTCGGTGGCTCATTATCAACAATAAACCAGAGGAAGGCTTAAAGGAACTTAGAAAAGCTGCAC
ACAGGAGTGGAATGAAGAATGCCAGAGACACCCTAACCCTGGAGATTTTGAAATCCACCATGAAAAAAGA
ACTGGAGGCAGCACAAAAAAAAAAACCTTCTCTGTGTGAAATGCTCCACATGCCCAACATATGTAAAAGG
ATCTCCCTCCTGTCCTTTACGAGATTTGCAAACTTTATGGCCTATTTTGGCCTTAATCTCCATGTCCAGC
ATCTGGGGAACAATGTTTTCCTGTTGCAGACTCTCTTTGGTGCAGTCATCCTCCTGGCCAACTGTGTTGC
ACCTTGGGCACTGAAATACATGAACCGTCGAGCAAGCCAGATGCTTCTCATGTTCCTACTGGCAATCTGC
CTTCTGGCCATCATATTTGTGCCACAAGAAATGCAGACGCTGCGTGAGGTTTTGGCAACACTGGGCTTAG
GAGCGTCTGCTCTTGCCAATACCCTTGCTTTTGCCCATGGAAATGAAGTAATTCCCACCATAATCAGGGC
AAGAGCTATGGGGATCAATGCAACCTTTGCTAATATAGCAGGAGCCCTGGCTCCCCTCATGATGATCCTA
AGTGTGTATTCTCCACCCCTGCCCTGGATCATCTATGGAGTCTTCCCCTTCATCTCTGGCTTTGCTTTCC
TCCTCCTTCCTGAAACCAGGAACAAGCCTCTGTTTGACACCATCCAGGATGAGAAAAATGAGAGAAAAGA
CCCCAGAGAACCAAAGCAAGAGGATCCGAGAGTGGAAGTGACGCAGTTTTAA

Translation (553 aa):
MAFQDLLGHAGDLWRFQILQTVFLSIFAVATYLHFMLENFTAFIPGHRCWVHILDNDTVSDNDTGALSQD
ALLRISIPLDSNMRPEKCRRFVHPQWQLLHLNGTFPNTSDADMEPCVDGWVYDRISFSSTIVTEWDLVCD
SQSLTSVAKFVFMAGMMVGGILGGHLSDRFGRRFVLRWCYLQVAIVGTCAALAPTFLIYCSLRFLSGIAA
MSLITNTIMLIAEWATHRFQAMGITLGMCPSGIAFMTLAGLAFAIRDWHILQLVVSVPYFVIFLTSSWLL
ESARWLIINNKPEEGLKELRKAAHRSGMKNARDTLTLEILKSTMKKELEAAQKKKPSLCEMLHMPNICKR
ISLLSFTRFANFMAYFGLNLHVQHLGNNVFLLQTLFGAVILLANCVAPWALKYMNRRASQMLLMFLLAIC
LLAIIFVPQEMQTLREVLATLGLGASALANTLAFAHGNEVIPTIIRARAMGINATFANIAGALAPLMMIL
SVYSPPLPWIIYGVFPFISGFAFLLLPETRNKPLFDTIQDEKNERKDPREPKQEDPRVEVTQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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