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Report for CCDS80423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80423.1 Public Mus musculus 5 Tmem270 23 108 98 CCDS HistoryNCBI Gene:76629Re-query CCDS DB by CCDS ID:80423.1Re-query CCDS DB by GeneID:76629See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201316.3 ENSMUSP00000144496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201316.3Link to Ensembl Protein Viewer:ENSMUSP00000144496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201316Re-query CCDS DB by Protein ID:ENSMUSP00000144496
Original member Current member NCBI NM_194065.3 NP_919041.1 Accepted alive Link to Nucleotide Sequence:NM_194065.3Link to Protein Sequence:NP_919041.1Re-query CCDS DB by Nucleotide ID:NM_194065Re-query CCDS DB by Protein ID:NP_919041Link to BLAST:NP_919041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919041.1 264 Q6UJB9-1 264 100% 0 0

Chromosomal Locations for CCDS 80423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134901611 134901895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134902577 134903014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134906628 134906699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGAGGCCGCTCCCCGGGTCAGATCTGGCCTTCTCAGAATTCTTCTGCGGGCTGGGAGGCTCTCTGCAC
TGCTGATCCAGAACCGCACTCACTTGTACCGCTTTCTGCTCCTGAAGATGGCCATCTTTCAGCACTGGGT
GTTGGGGCTGGCCCAGGAAGCCCGGGGTTCAGGCAGTGACCAGGCCCGCCAGCTTCCGGAAGTCATCATA
ACCTGTGCTCTGAGTTTGGCCCTTCGAGCTGGACTAACATTGCTGTGGGTCCCCATGTGGCTGCTGCTCT
GGGGACCCAGGCTGGCATACAGAGTCGGGCTGTGCTGCACTCGTACTGTGAGGTTGGCCCTGGGGCATCT
CTGTGTCTGTGAACCTCTCGGTCTGTCTCCAGCCACCTTCAGGGACCTGTTTCTATCCTGCCTGCACAGC
CTGATGCTGGTAGCTTTGCTGCTGCTGCTGCTAACCTGGAAGCTGATGCAGAAAGCCCATCACTTTAGTC
TGGGCTGGCTGCCCAGTCAGAATTCTGTGTTGCTGGAAGCCCCGGCCCTGCTGAGACGCCTCTACCTGTG
GGTGGAACACAGGACCACACTCACTTCCTGGAACCTGGCCTATCTTGTCACTTGGACGACCTGCCTTGCT
TCCCACCTGCTTCAAGCTGCCTTTGAACACACAACCCAACTGGCCCAGGCCCAGGAAGTCAAATCCCAGG
AGACCTCGGGGCCCCCGCCTCAGTTCTTAATTCCAGAATCCTCCACCACTGAGTCTGGACCCCTCCCACC
CCAGCCTGAAACCCCTGGAGAATAA

Translation (264 aa):
MEAAPRVRSGLLRILLRAGRLSALLIQNRTHLYRFLLLKMAIFQHWVLGLAQEARGSGSDQARQLPEVII
TCALSLALRAGLTLLWVPMWLLLWGPRLAYRVGLCCTRTVRLALGHLCVCEPLGLSPATFRDLFLSCLHS
LMLVALLLLLLTWKLMQKAHHFSLGWLPSQNSVLLEAPALLRRLYLWVEHRTTLTSWNLAYLVTWTTCLA
SHLLQAAFEHTTQLAQAQEVKSQETSGPPPQFLIPESSTTESGPLPPQPETPGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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