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Report for CCDS80304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80304.1 Public Mus musculus 5 Pdcl2 23 108 98 CCDS HistoryNCBI Gene:79455Re-query CCDS DB by CCDS ID:80304.1Re-query CCDS DB by GeneID:79455See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122213.7 ENSMUSP00000113699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122213.7Link to Ensembl Protein Viewer:ENSMUSP00000113699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122213Re-query CCDS DB by Protein ID:ENSMUSP00000113699
Original member Current member NCBI NM_001310637.1 NP_001297566.1 Accepted alive Link to Nucleotide Sequence:NM_001310637.1Link to Protein Sequence:NP_001297566.1Re-query CCDS DB by Nucleotide ID:NM_001310637Re-query CCDS DB by Protein ID:NP_001297566Link to BLAST:NP_001297566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297566.1 192 Q78Y63-2 192 100% 0 0

Chromosomal Locations for CCDS 80304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76312447 76312598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76317801 76318009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76319127 76319270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76324306 76324379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGACACTGGCACAACTGAAAGAAGCAGAAGATGAATTTGATGAAGAAGACATAAAAGCTATTGAAATAT
ATAGAGAAAAGCGGTTACAGGAATGGAAAGCACTTAAGAAGAAACAAAAATTTGGGGAATTGAGAGAAAT
TTCTGGAAATCAGTATGTGAATGAAGTCACAAATGCAGAAAAAGACCTGTGGGTTGTAATTCATCTCTAT
AGATCAAGTGTCCCAATGTGCTTGGTGGTTAACCAACATCTGAGTGTCCTAGCAAGAAAGTTTCCAGAAA
CCAAATTTGTTAAAGCCATCGTGAATAGCTGCATTGAACACTACCATGACAACTGTTTACCAACAATTTT
TGTTTATAAAAATGGTCAGATAGAAGGCAAATTCATTGGAATTATAGAATGTGGAGGGATAAATCTCAAG
CTAGAAGAACTTGAATGGAAACTATCAGAAGTTGGAGCGATACAGAGTGACTTGGAAGAAAACCCCAAAA
AGGGCATTGCAGATATGATGGTGTCTTCAATTAGAAACATCTCCATTTATGACAGCGATAGCTCTGGCAG
TGACACTGAGGCTAAGTAG

Translation (192 aa):
MTLAQLKEAEDEFDEEDIKAIEIYREKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEKDLWVVIHLY
RSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLK
LEELEWKLSEVGAIQSDLEENPKKGIADMMVSSIRNISIYDSDSSGSDTEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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