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Report for CCDS80257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80257.1 Public Mus musculus 5 Slbp 23 108 98 CCDS HistoryNCBI Gene:20492Re-query CCDS DB by CCDS ID:80257.1Re-query CCDS DB by GeneID:20492See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101354.9 ENSMUSP00000098906.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101354.9Link to Ensembl Protein Viewer:ENSMUSP00000098906.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101354Re-query CCDS DB by Protein ID:ENSMUSP00000098906
Original member Current member NCBI NM_001289724.1 NP_001276653.1 Accepted alive Link to Nucleotide Sequence:NM_001289724.1Link to Protein Sequence:NP_001276653.1Re-query CCDS DB by Nucleotide ID:NM_001289724Re-query CCDS DB by Protein ID:NP_001276653Link to BLAST:NP_001276653.1

Chromosomal Locations for CCDS 80257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33640812 33640928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33641901 33641982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33643737 33643886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33645500 33645637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33649743 33649847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33651963 33652079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33652195 33652253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCCTGCAGACCTAGAAGCCCACCCGGTTATGGGAGTCGCCGCGACGGTGGTGCGAGCCCGCGGTCCC
CTGCGAGATGGAGTCTCGGACGGAAGCGCAGAGCGGACGGAAGGGACCGGAAGCCCGAGGACTCCGAGGA
AGGCGAGCTCCAGACTGCGGACCACCGACCTGAAAGCTTTACAACTCCTGAAGGCCATAAGCCCCGTTCT
AGATGTTCTGACTGGGCCAGTGCAGTTGAAGAAGATGAAATGAGGACCAGAGTTAACAAAGAGATTGCAA
GTTCTGATTCAAAGGAGTCTATGTCTTCAGTGCCTGCTGATGTGGAGACGGATGAAAGTGTCTTGATGAG
AAGGCAGAAGCAGATCAACTACGGGAAGAACACTATTGCCTATGATCGATATATTAAAGAGGTGCCCAGA
CACCTGCGACAACCTGGAATCCATCCCAGGACCCCCAACAAATTTAAGAAGTACAGCCGGCGGTCATGGG
ACCAACAAATTAAACTCTGGAAGGTGGCTTTGCATTTTTGGGATCCTCCTGCTGAAGAAGGATGTGATTT
GCAAGAAATACAACCTGTAGATCTTGGGGAAATGGAGACTGAATTCACAGAAAGCAGCTCTGAGTCTCAG
ACAAGTTCACAGGATAACTTTGATGTGTATGCTGGCACACCCACCAAAGTCAGACACGTGGACTGCCAAG
TGGAGGATGAGTTTGATTTGGAAGCTTGTTTAACTGAACCTTTGAAAGACTTCTCTGCCATGAGTTAA

Translation (255 aa):
MACRPRSPPGYGSRRDGGASPRSPARWSLGRKRRADGRDRKPEDSEEGELQTADHRPESFTTPEGHKPRS
RCSDWASAVEEDEMRTRVNKEIASSDSKESMSSVPADVETDESVLMRRQKQINYGKNTIAYDRYIKEVPR
HLRQPGIHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIQPVDLGEMETEFTESSSESQ
TSSQDNFDVYAGTPTKVRHVDCQVEDEFDLEACLTEPLKDFSAMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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