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Report for CCDS80255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80255.1 Public Mus musculus 5 Ctbp1 23 108 98 CCDS HistoryNCBI Gene:13016Re-query CCDS DB by CCDS ID:80255.1Re-query CCDS DB by GeneID:13016See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201575.3 ENSMUSP00000144554.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201575.3Link to Ensembl Protein Viewer:ENSMUSP00000144554.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201575Re-query CCDS DB by Protein ID:ENSMUSP00000144554
Original member Current member NCBI NM_001310535.1 NP_001297464.1 Accepted alive Link to Nucleotide Sequence:NM_001310535.1Link to Protein Sequence:NP_001297464.1Re-query CCDS DB by Nucleotide ID:NM_001310535Re-query CCDS DB by Protein ID:NP_001297464Link to BLAST:NP_001297464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297464.1 367 O88712-3 367 100% 0 0

Chromosomal Locations for CCDS 80255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33248500 33248686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33249107 33249224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33249587 33249714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33250371 33250501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33250858 33251072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33259138 33259344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33261009 33261126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTACCATACCATCACACTGACCAGAGAAGATCTGGAGAAGTTTAAAGCTCTTAGAATCATCGTCCGAA
TTGGCAGCGGGTTTGACAATATCGACATCAAGTCAGCTGGGGATCTAGGCATCGCAGTGTGCAATGTGCC
GGCAGCATCTGTGGAAGAAACGGCAGACTCCACCCTGTGCCACATCCTGAACCTGTACCGACGAACCACC
TGGCTACACCAGGCCCTTCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAG
GAGCTGCCAGGATCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACT
TCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGATCCATACCTATCTGATGGAATCGAGCGGGCC
CTGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCG
GCCTCAATGAGCACAACCACCACCTCATCAATGACTTTACTGTCAAGCAGATGAGACAAGGAGCCTTTCT
GGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTGGCCCAGGCCCTGAAGGAAGGGCGGATC
CGTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCCTTCAGCTTTAGCCAGGGACCCTTAAAGGATGCAC
CCAACCTCATCTGCACACCCCATGCTGCATGGTACAGTGAGCAGGCGTCCATTGAGATGAGAGAGGAGGC
AGCCCGGGAAATCCGGCGAGCCATCACAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGAC
CACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTG
CCTACAGCAGGTACCCTCCAGGCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGGAT
TGTTCCCAGTGCCATGTCCCTGTCTCATGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCCCTCTCCT
GGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAGTGACCAGTTGTAG

Translation (367 aa):
MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTT
WLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERA
LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRI
RGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKD
HLTAATHWASMDPAVVHPELNGAAYSRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSP
GQTVKPEADRDHTSDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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