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Report for CCDS80003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80003.1 Public Mus musculus 3 Sort1 23 108 98 CCDS HistoryNCBI Gene:20661Re-query CCDS DB by CCDS ID:80003.1Re-query CCDS DB by GeneID:20661See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135636.5 ENSMUSP00000123564.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135636.5Link to Ensembl Protein Viewer:ENSMUSP00000123564.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135636Re-query CCDS DB by Protein ID:ENSMUSP00000123564
Original member Current member NCBI NM_001271599.1 NP_001258528.1 Accepted alive Link to Nucleotide Sequence:NM_001271599.1Link to Protein Sequence:NP_001258528.1Re-query CCDS DB by Nucleotide ID:NM_001271599Re-query CCDS DB by Protein ID:NP_001258528Link to BLAST:NP_001258528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258528.1 858 Q6PHU5-2 858 100% 0 0

Chromosomal Locations for CCDS 80003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108284141 108284440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108308477 108308536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108310144 108310217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108324596 108324698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108325649 108325813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108328008 108328081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108331911 108331960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108334566 108334696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108337791 108337935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108338811 108338966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108340599 108340705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108344854 108344956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108345714 108345882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108346657 108346847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108348568 108348757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108351672 108351788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108354133 108354241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108355472 108355570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108356231 108356337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108356577 108356688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108357229 108357243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGAGCGGCCCCGGGGAGCTGCGGACGGCCTTTTGCGCTGGCCCCTCGGCCTCCTCCTGCTCCTTCAAC
TGCTGCCTCCTGCCGCCGTCGGCCAGGACCGGCTGGACGCGCCGCCGCCGCCCGCGCCTCCTCTGCTGCG
CTGGGCCGGTCCGGTCGGGGTGAGCTGGGGGCTGCGCGCCGCCGCGCCCGGGGGCCCCGTCCCCCGCGCT
GGCCGTTGGCGCCGCGGCGCGCCCGCCGAGGACCAAGACTGCGGCCGCCTCCCGGACTTCATCGCCAAGC
TGACCAACAATACGCACCAGCATGTCTTTGATGACCTCAGTGGCTCAGTGTCCTTGTCCTGGGTTGGAGA
CAGCACTGGGGTTATTCTCGTCCTGACCACTTTCCAAGTGCCTCTGGTAATTGTGAGCTTTGGACAGTCC
AAGTTGTATCGAAGTGAGGATTATGGAAAGAACTTTAAGGATATTACAAATCTCATCAATAACACCTTCA
TTCGGACGGAATTTGGCATGGCTATTGGTCCTGAGAACTCTGGAAAGGTGATACTAACAGCGGAGGTGTC
CGGGGGAAGCCGAGGCGGAAGAGTGTTCAGGTCATCAGACTTTGCCAAGAACTTTGTGCAAACAGATCTC
CCCTTTCATCCTCTGACGCAGATGATGTACAGCCCTCAGAATTCTGATTACCTGTTAGCTCTCAGCACCG
AAAATGGCCTGTGGGTGTCCAAGAATTTTGGGGAAAAATGGGAAGAAATCCACAAAGCAGTATGTTTGGC
CAAATGGGGACCAAACAACATCATCTTCTTTACCACCCATGTGAATGGCTCCTGCAAAGCTGATCTTGGT
GCCCTGGAATTATGGAGAACATCCGACTTGGGAAAAACCTTCAAAACCATTGGTGTGAAAATCTACTCCT
TTGGTCTTGGGGGCCGTTTCCTTTTTGCCTCTGTGATGGCTGATAAGGACACAACAAGAAGGATCCATGT
GTCAACAGACCAGGGGGACACATGGAGCATGGCACAACTTCCTTCTGTGGGACAGGAACAGTTCTACTCC
ATCCTGGCAGCCAATGAGGACATGGTCTTCATGCATGTAGATGAACCTGGAGATACCGGGTTTGGCACCA
TCTTTACCTCTGATGATCGAGGCATTGTCTACTCCAAGTCTCTGGACAGACATCTCTATACCACCACAGG
CGGGGAGACGGACTTTACCAACGTGACTTCCCTCCGTGGGGTCTATATAACAAGCACGCTCTCAGAAGAT
AACTCTATTCAGAGCATGATCACTTTTGACCAGGGAGGACGGTGGGAGCACCTGCGGAAGCCGGAGAACA
GCAAGTGCGACGCTACCGCAAAGAACAAGAACGAGTGCAGCCTTCATATCCATGCTTCTTATAGCATCTC
CCAGAAGCTAAACGTTCCAATGGCCCCACTTTCCGAGCCCAATGCTGTGGGCATAGTCATCGCTCACGGT
AGTGTGGGAGATGCCATCTCGGTGATGGTCCCAGATGTGTACATCTCAGATGATGGGGGTTACTCCTGGG
CGAAGATGCTAGAAGGACCACATTACTATACCATCCTGGACTCTGGAGGCATCATTGTGGCCATTGAGCA
CAGCAACCGTCCTATCAATGTGATTAAGTTCTCCACAGATGAAGGCCAGTGCTGGCAGAGCTATGTGTTC
ACACAGGAGCCCATCTACTTCACTGGGCTTGCTTCCGAGCCTGGAGCCAGGTCCATGAACATCAGCATCT
GGGGATTCACAGAGTCTTTCATTACCCGCCAGTGGGTCTCCTACACAGTCGATTTCAAAGACATCCTTGA
GCGGAATTGTGAAGAGGATGACTATACCACGTGGCTGGCACACTCCACAGACCCTGGAGATTACAAAGAC
GGCTGCATTTTGGGCTATAAAGAACAGTTCCTACGGCTACGGAAGTCATCCGTCTGTCAGAATGGTCGAG
ACTATGTTGTGGCCAAGCAGCCATCCGTCTGTCCGTGTTCCCTGGAGGACTTCCTCTGTGACTTTGGCTA
CTTCCGTCCGGAGAACGCCTCAGAGTGCGTGGAGCAGCCTGAACTGAAGGGGCATGAGTTAGAGTTCTGT
CTGTACGGCAAGGAGGAGCACCTGACAACAAATGGGTACCGGAAAATCCCAGGAGACAAATGCCAAGGTG
GGATGAATCCCGCCAGAGAAGTAAAAGACTTGAAAAAGAAATGCACAAGCAACTTCTTGAACCCCACAAA
GCAGGACTCCCGCCCACAGGGACACAGCTTGTCCCAGAATCCAGCTCCGCCTCCTCTTGGATACACTGAA
AACACACACTTCCTATCTCCTACCCAGAAGCAGAATTCCAAGTCAAATTCTGTCCCTATTATCCTGGCCA
TCGTGGGACTGATGCTTGTCACAGTCGTAGCAGGAGTCCTCATTGTGAAGAAATATGTCTGTGGCGGAAG
GTTCCTGGTGCACCGGTACTCGGTGCTACAGCAGCACGCAGAGGCTGACGGCGTAGAGGCTTTGGATTCA
ACCTCCCACGCTAAAAGCGGATATCACGACGACTCAGATGAGGACCTCCTGGAATAG

Translation (858 aa):
MERPRGAADGLLRWPLGLLLLLQLLPPAAVGQDRLDAPPPPAPPLLRWAGPVGVSWGLRAAAPGGPVPRA
GRWRRGAPAEDQDCGRLPDFIAKLTNNTHQHVFDDLSGSVSLSWVGDSTGVILVLTTFQVPLVIVSFGQS
KLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSRGGRVFRSSDFAKNFVQTDL
PFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGEKWEEIHKAVCLAKWGPNNIIFFTTHVNGSCKADLG
ALELWRTSDLGKTFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYS
ILAANEDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSTLSED
NSIQSMITFDQGGRWEHLRKPENSKCDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHG
SVGDAISVMVPDVYISDDGGYSWAKMLEGPHYYTILDSGGIIVAIEHSNRPINVIKFSTDEGQCWQSYVF
TQEPIYFTGLASEPGARSMNISIWGFTESFITRQWVSYTVDFKDILERNCEEDDYTTWLAHSTDPGDYKD
GCILGYKEQFLRLRKSSVCQNGRDYVVAKQPSVCPCSLEDFLCDFGYFRPENASECVEQPELKGHELEFC
LYGKEEHLTTNGYRKIPGDKCQGGMNPAREVKDLKKKCTSNFLNPTKQDSRPQGHSLSQNPAPPPLGYTE
NTHFLSPTQKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEADGVEALDS
TSHAKSGYHDDSDEDLLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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